Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   ACH6FO_RS03325 Genome accession   NZ_CP172351
Coordinates   623928..624311 (+) Length   127 a.a.
NCBI ID   WP_002852281.1    Uniprot ID   Q9PHN2
Organism   Campylobacter jejuni strain YH028     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 618928..629311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FO_RS03305 (ACH6FO_03305) - 619007..620941 (-) 1935 WP_070216825.1 ribonuclease R family protein -
  ACH6FO_RS03310 (ACH6FO_03310) ilvC 621060..622082 (+) 1023 WP_002921147.1 ketol-acid reductoisomerase -
  ACH6FO_RS03315 (ACH6FO_03315) - 622086..623168 (+) 1083 WP_002876692.1 divergent polysaccharide deacetylase family protein -
  ACH6FO_RS03320 (ACH6FO_03320) dprA 623158..623931 (+) 774 WP_022552258.1 DNA-processing protein DprA Machinery gene
  ACH6FO_RS03325 (ACH6FO_03325) dprB 623928..624311 (+) 384 WP_002852281.1 Holliday junction resolvase RuvX Machinery gene
  ACH6FO_RS03330 (ACH6FO_03330) - 624340..625179 (+) 840 WP_002866496.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  ACH6FO_RS03335 (ACH6FO_03335) msrA 625355..625852 (-) 498 WP_002866497.1 peptide-methionine (S)-S-oxide reductase MsrA -
  ACH6FO_RS03340 (ACH6FO_03340) ppa 625893..626411 (-) 519 WP_002855031.1 inorganic diphosphatase -
  ACH6FO_RS03345 (ACH6FO_03345) adk 626421..626999 (-) 579 WP_070216827.1 adenylate kinase -
  ACH6FO_RS03350 (ACH6FO_03350) aspS 626996..628747 (-) 1752 WP_012006668.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14088.59 Da        Isoelectric Point: 9.5433

>NTDB_id=952107 ACH6FO_RS03325 WP_002852281.1 623928..624311(+) (dprB) [Campylobacter jejuni strain YH028]
MRALALDVGLKRIGVALCIDKKIALPLDAVLRKNRNQAANEIKNLLKIHEISLLIVGIPKGGSSEEEMTRRIKHFVSLLE
FDKEICFVDESGTSKEALGYGVANTRKKDGKLDSLSAFIMIKDYFAL

Nucleotide


Download         Length: 384 bp        

>NTDB_id=952107 ACH6FO_RS03325 WP_002852281.1 623928..624311(+) (dprB) [Campylobacter jejuni strain YH028]
ATGAGAGCTTTGGCTTTAGATGTAGGTTTAAAACGCATAGGTGTAGCGCTTTGCATAGATAAAAAGATCGCTTTGCCTTT
AGATGCAGTTTTAAGAAAAAATCGCAATCAAGCCGCTAATGAAATTAAAAATTTACTTAAAATACATGAGATTTCTTTAC
TCATTGTTGGCATTCCTAAGGGTGGATCAAGTGAAGAAGAAATGACAAGACGCATTAAGCATTTTGTTTCTTTGCTTGAA
TTTGATAAAGAAATTTGCTTTGTAGATGAAAGCGGAACAAGCAAAGAAGCTTTAGGATACGGCGTAGCCAATACACGCAA
AAAAGATGGTAAATTAGACTCTTTATCCGCTTTTATCATGATAAAGGATTATTTTGCTCTCTAG

Domains

Predicted by InterProScan.

Holliday junction resolvase (RuvX)

(1-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9PHN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

44.882

100

0.449