Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACH6FH_RS05455 Genome accession   NZ_CP172349
Coordinates   1060565..1061113 (+) Length   182 a.a.
NCBI ID   WP_002854048.1    Uniprot ID   -
Organism   Campylobacter jejuni strain YH029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1055565..1066113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6FH_RS05420 (ACH6FH_05420) - 1055753..1056178 (+) 426 WP_002777060.1 N-acetyltransferase -
  ACH6FH_RS05425 (ACH6FH_05425) - 1056242..1056862 (+) 621 WP_002869051.1 NAD(P)H-dependent oxidoreductase -
  ACH6FH_RS05430 (ACH6FH_05430) - 1056862..1057469 (+) 608 Protein_1048 NAD(P)H-dependent oxidoreductase -
  ACH6FH_RS05435 (ACH6FH_05435) pgsA 1057594..1058130 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACH6FH_RS05440 (ACH6FH_05440) rseP 1058127..1059233 (+) 1107 WP_002812870.1 RIP metalloprotease RseP -
  ACH6FH_RS05445 (ACH6FH_05445) - 1059226..1060092 (+) 867 WP_002812869.1 VirK family antimicrobial peptide resistance protein -
  ACH6FH_RS05450 (ACH6FH_05450) rpsF 1060179..1060556 (+) 378 WP_002812868.1 30S ribosomal protein S6 -
  ACH6FH_RS05455 (ACH6FH_05455) ssb 1060565..1061113 (+) 549 WP_002854048.1 single-stranded DNA-binding protein Machinery gene
  ACH6FH_RS05460 (ACH6FH_05460) rpsR 1061124..1061384 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  ACH6FH_RS05465 (ACH6FH_05465) lon 1061444..1063819 (-) 2376 WP_002853487.1 endopeptidase La -
  ACH6FH_RS05470 (ACH6FH_05470) - 1063836..1064483 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  ACH6FH_RS05475 (ACH6FH_05475) fliW 1064644..1065033 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  ACH6FH_RS05480 (ACH6FH_05480) proC 1065033..1065764 (+) 732 WP_002869050.1 pyrroline-5-carboxylate reductase Machinery gene
  ACH6FH_RS05485 (ACH6FH_05485) ctsT 1065761..1066063 (+) 303 WP_002855822.1 transformation system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20626.52 Da        Isoelectric Point: 5.0431

>NTDB_id=952067 ACH6FH_RS05455 WP_002854048.1 1060565..1061113(+) (ssb) [Campylobacter jejuni strain YH029]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=952067 ACH6FH_RS05455 WP_002854048.1 1060565..1061113(+) (ssb) [Campylobacter jejuni strain YH029]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGTGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39