Detailed information    

insolico Bioinformatically predicted

Overview

Name   Cj0683   Type   Machinery gene
Locus tag   WHQ32_RS02920 Genome accession   NZ_CP148161
Coordinates   537088..537525 (+) Length   145 a.a.
NCBI ID   WP_002852324.1    Uniprot ID   A0AA44HIV8
Organism   Campylobacter jejuni strain Z1323HCJ0040     
Function   initialization of DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 532088..542525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHQ32_RS02895 (WHQ32_02895) - 532581..534167 (+) 1587 WP_002852299.1 DUF4118 domain-containing protein -
  WHQ32_RS02900 (WHQ32_02900) - 534170..534400 (+) 231 WP_002852325.1 hypothetical protein -
  WHQ32_RS02905 (WHQ32_02905) uvrB 534502..536475 (-) 1974 WP_002852130.1 excinuclease ABC subunit UvrB -
  WHQ32_RS02910 (WHQ32_02910) - 536629..536859 (+) 231 WP_002852327.1 hypothetical protein -
  WHQ32_RS02915 (WHQ32_02915) - 536849..537091 (+) 243 WP_002852220.1 hypothetical protein -
  WHQ32_RS02920 (WHQ32_02920) Cj0683 537088..537525 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  WHQ32_RS02925 (WHQ32_02925) priA 537507..539360 (+) 1854 WP_002852169.1 primosomal protein N' -
  WHQ32_RS02930 (WHQ32_02930) cipA 539370..540764 (-) 1395 Protein_570 DUF2972 domain-containing protein -
  WHQ32_RS02935 (WHQ32_02935) ispG 540912..541985 (+) 1074 WP_002852250.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16765.76 Da        Isoelectric Point: 8.0993

>NTDB_id=952004 WHQ32_RS02920 WP_002852324.1 537088..537525(+) (Cj0683) [Campylobacter jejuni strain Z1323HCJ0040]
MNKAFTLLELVFVILILGILSSLSLSFINTTKDEVKILKLKMDYEMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEK
LFYCLNDCDYSLLDTPIYSDFKSWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI

Nucleotide


Download         Length: 438 bp        

>NTDB_id=952004 WHQ32_RS02920 WP_002852324.1 537088..537525(+) (Cj0683) [Campylobacter jejuni strain Z1323HCJ0040]
ATGAATAAAGCTTTTACTCTGCTTGAGCTTGTTTTTGTGATTTTGATTTTGGGAATTTTATCAAGCTTATCTTTATCTTT
TATCAATACTACAAAAGATGAGGTTAAAATTTTAAAATTAAAAATGGACTATGAAATGCTAAGCTCAGCTCTTGCTTTAA
TGCGTAGTCAAATGAGACTTAAAAATTTAAATTTTCCAGAAATTTTAGATAATGCACAAAACAATCAAGCCAAAGAAAAA
CTCTTTTATTGTTTAAATGATTGTGATTATTCTTTGCTTGATACACCTATTTATTCTGATTTTAAATCTTGGATAAAAAT
AGGTAAAAATCACTATAGATTTGCATTAAACGCCAAAGAGATGGTTGAATTTATTTATGATTCTAAAGAAGGTTTGTTAA
AGTGTATAGGAAGTTCTAGATGCAAAGATCTGATATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  Cj0683 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

100

100

1