Detailed information
Bioinformatically predicted
Overview
| Name | waaF | Type | Regulator |
| Locus tag | WHQ26_RS02970 | Genome accession | NZ_CP148155 |
| Coordinates | 581662..582612 (-) | Length | 316 a.a. |
| NCBI ID | WP_002867402.1 | Uniprot ID | - |
| Organism | Campylobacter jejuni strain Z1323HCJ0069 | ||
| Function | repress natural transformation (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 578024..611876 | 581662..582612 | within | 0 |
Gene organization within MGE regions
Location: 578024..611876
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WHQ26_RS02950 (WHQ26_02950) | rfaD | 578024..578977 (+) | 954 | WP_234728994.1 | ADP-glyceromanno-heptose 6-epimerase | - |
| WHQ26_RS02955 (WHQ26_02955) | rfaE1 | 578970..580355 (+) | 1386 | WP_002867399.1 | D-glycero-beta-D-manno-heptose-7-phosphate kinase | - |
| WHQ26_RS02960 (WHQ26_02960) | gmhA | 580352..580912 (+) | 561 | WP_002867400.1 | D-sedoheptulose 7-phosphate isomerase | - |
| WHQ26_RS02965 (WHQ26_02965) | - | 580912..581676 (+) | 765 | WP_002867401.1 | glycosyltransferase family 25 protein | - |
| WHQ26_RS02970 (WHQ26_02970) | waaF | 581662..582612 (-) | 951 | WP_002867402.1 | lipopolysaccharide heptosyltransferase II | Regulator |
| WHQ26_RS02975 (WHQ26_02975) | - | 582671..583492 (+) | 822 | WP_002867403.1 | glycosyltransferase family 2 protein | - |
| WHQ26_RS02980 (WHQ26_02980) | - | 583563..584519 (+) | 957 | WP_002867404.1 | UDP-glucuronic acid decarboxylase family protein | - |
| WHQ26_RS02985 (WHQ26_02985) | - | 584525..585826 (+) | 1302 | WP_338851171.1 | UDP-glucose/GDP-mannose dehydrogenase family protein | - |
| WHQ26_RS02990 (WHQ26_02990) | galE | 585823..586797 (+) | 975 | WP_146263329.1 | UDP-glucose 4-epimerase GalE | - |
| WHQ26_RS02995 (WHQ26_02995) | glf | 586799..587908 (+) | 1110 | WP_234728995.1 | UDP-galactopyranose mutase | - |
| WHQ26_RS03000 (WHQ26_03000) | - | 587991..589040 (+) | 1050 | WP_002867408.1 | glycosyltransferase | - |
| WHQ26_RS03005 (WHQ26_03005) | - | 589037..590089 (+) | 1053 | WP_100608349.1 | glycosyltransferase family 2 protein | - |
| WHQ26_RS03010 (WHQ26_03010) | - | 590295..591230 (+) | 936 | Protein_577 | glycosyltransferase family 2 protein | - |
| WHQ26_RS03015 (WHQ26_03015) | - | 591308..592516 (+) | 1209 | WP_146263328.1 | glycosyltransferase family 2 protein | - |
| WHQ26_RS03020 (WHQ26_03020) | - | 592509..593396 (+) | 888 | WP_011049886.1 | glycosyltransferase family 2 protein | - |
| WHQ26_RS03025 (WHQ26_03025) | - | 593365..594915 (-) | 1551 | WP_002867216.1 | glycosyltransferase | - |
| WHQ26_RS03030 (WHQ26_03030) | htrB | 594912..595799 (-) | 888 | WP_002867215.1 | lipid A biosynthesis lauroyl acyltransferase HtrB | - |
| WHQ26_RS03035 (WHQ26_03035) | waaC | 595789..596817 (-) | 1029 | WP_002859241.1 | lipopolysaccharide heptosyltransferase I | - |
| WHQ26_RS03040 (WHQ26_03040) | - | 596884..597678 (+) | 795 | WP_002860221.1 | 3'-5' exonuclease | - |
| WHQ26_RS03045 (WHQ26_03045) | galE | 597737..598723 (+) | 987 | WP_002867214.1 | UDP-glucose 4-epimerase GalE | - |
| WHQ26_RS03050 (WHQ26_03050) | pglK | 598717..600411 (+) | 1695 | WP_146263327.1 | ABC-type lipopolysaccharide transporter PglK | - |
| WHQ26_RS03055 (WHQ26_03055) | pglH | 600408..601487 (+) | 1080 | WP_002859237.1 | GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase | - |
| WHQ26_RS03060 (WHQ26_03060) | pglI | 601480..602409 (+) | 930 | WP_002854071.1 | GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase | - |
| WHQ26_RS03065 (WHQ26_03065) | pglJ | 602397..603494 (+) | 1098 | WP_002853444.1 | N-acetylgalactosamine-N, N'-diacetylbacillosaminyl-diphospho-undecaprenol 4-alpha-N-acetylgalactosaminyltransferase | - |
| WHQ26_RS03070 (WHQ26_03070) | pglB | 603498..605639 (+) | 2142 | WP_338851172.1 | undecaprenyl-diphosphooligosaccharide--protein glycotransferase | - |
| WHQ26_RS03075 (WHQ26_03075) | pglA | 605649..606779 (+) | 1131 | WP_338851173.1 | N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase | - |
| WHQ26_RS03080 (WHQ26_03080) | pglC | 606772..607374 (+) | 603 | WP_002853498.1 | undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase | - |
| WHQ26_RS03085 (WHQ26_03085) | pglD | 607361..607951 (+) | 591 | WP_002853531.1 | UDP-N-acetylbacillosamine N-acetyltransferase | - |
| WHQ26_RS03090 (WHQ26_03090) | pglE | 608049..609209 (+) | 1161 | WP_146263325.1 | UDP-N-acetylbacillosamine transaminase | - |
| WHQ26_RS03095 (WHQ26_03095) | pglF | 609211..610983 (+) | 1773 | WP_052791641.1 | UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) | - |
| WHQ26_RS03100 (WHQ26_03100) | pglG | 610983..611876 (+) | 894 | WP_002856519.1 | PDC sensor domain-containing protein | - |
Sequence
Protein
Download Length: 316 a.a. Molecular weight: 36324.91 Da Isoelectric Point: 10.3207
>NTDB_id=951875 WHQ26_RS02970 WP_002867402.1 581662..582612(-) (waaF) [Campylobacter jejuni strain Z1323HCJ0069]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI
Nucleotide
Download Length: 951 bp
>NTDB_id=951875 WHQ26_RS02970 WP_002867402.1 581662..582612(-) (waaF) [Campylobacter jejuni strain Z1323HCJ0069]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| waaF | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
92.652 |
99.051 |
0.918 |