Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   WHP83_RS04880 Genome accession   NZ_CP148154
Coordinates   937939..938889 (-) Length   316 a.a.
NCBI ID   WP_002867402.1    Uniprot ID   -
Organism   Campylobacter jejuni strain Z1323HCJ0086     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 934301..958684 937939..938889 within 0


Gene organization within MGE regions


Location: 934301..958684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP83_RS04860 (WHP83_04860) rfaD 934301..935254 (+) 954 WP_234728994.1 ADP-glyceromanno-heptose 6-epimerase -
  WHP83_RS04865 (WHP83_04865) rfaE1 935247..936632 (+) 1386 WP_002867399.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase -
  WHP83_RS04870 (WHP83_04870) gmhA 936629..937189 (+) 561 WP_002867400.1 D-sedoheptulose 7-phosphate isomerase -
  WHP83_RS04875 (WHP83_04875) - 937189..937953 (+) 765 WP_002867401.1 glycosyltransferase family 25 protein -
  WHP83_RS04880 (WHP83_04880) waaF 937939..938889 (-) 951 WP_002867402.1 lipopolysaccharide heptosyltransferase II Regulator
  WHP83_RS04885 (WHP83_04885) - 938948..939769 (+) 822 WP_002867403.1 glycosyltransferase family 2 protein -
  WHP83_RS04890 (WHP83_04890) - 939840..940796 (+) 957 WP_002867404.1 UDP-glucuronic acid decarboxylase family protein -
  WHP83_RS04895 (WHP83_04895) - 940802..942100 (+) 1299 WP_002867405.1 UDP-glucose/GDP-mannose dehydrogenase family protein -
  WHP83_RS04900 (WHP83_04900) galE 942097..943071 (+) 975 WP_146263329.1 UDP-glucose 4-epimerase GalE -
  WHP83_RS04905 (WHP83_04905) glf 943073..944182 (+) 1110 WP_234728995.1 UDP-galactopyranose mutase -
  WHP83_RS04910 (WHP83_04910) - 944265..945314 (+) 1050 WP_002867408.1 glycosyltransferase -
  WHP83_RS04915 (WHP83_04915) - 945311..946363 (+) 1053 WP_100608349.1 glycosyltransferase family 2 protein -
  WHP83_RS04920 (WHP83_04920) - 946548..946697 (+) 150 WP_052783150.1 glycosyltransferase -
  WHP83_RS04925 (WHP83_04925) - 946858..947505 (+) 648 WP_234728996.1 glycosyltransferase family 2 protein -
  WHP83_RS04930 (WHP83_04930) - 947583..948791 (+) 1209 WP_146263328.1 glycosyltransferase family 2 protein -
  WHP83_RS04935 (WHP83_04935) - 948784..949671 (+) 888 WP_011049886.1 glycosyltransferase family 2 protein -
  WHP83_RS04940 (WHP83_04940) - 949640..951190 (-) 1551 WP_002867216.1 glycosyltransferase -
  WHP83_RS04945 (WHP83_04945) htrB 951187..952074 (-) 888 WP_002867215.1 lipid A biosynthesis lauroyl acyltransferase HtrB -
  WHP83_RS04950 (WHP83_04950) waaC 952064..953092 (-) 1029 WP_002859241.1 lipopolysaccharide heptosyltransferase I -
  WHP83_RS04955 (WHP83_04955) - 953159..953953 (+) 795 WP_002860221.1 3'-5' exonuclease -
  WHP83_RS04960 (WHP83_04960) galE 954012..954998 (+) 987 WP_002867214.1 UDP-glucose 4-epimerase GalE -
  WHP83_RS04965 (WHP83_04965) pglK 954992..956686 (+) 1695 WP_146263327.1 ABC-type lipopolysaccharide transporter PglK -
  WHP83_RS04970 (WHP83_04970) pglH 956683..957762 (+) 1080 WP_002859237.1 GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)- diNAcBac-PP-undecaprenol alpha-1,4-N-acetyl-D-galactosaminyltransferase -
  WHP83_RS04975 (WHP83_04975) pglI 957755..958684 (+) 930 WP_002854071.1 GalNAc(5)-diNAcBac-PP-undecaprenol beta-1,3-glucosyltransferase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 36324.91 Da        Isoelectric Point: 10.3207

>NTDB_id=951851 WHP83_RS04880 WP_002867402.1 937939..938889(-) (waaF) [Campylobacter jejuni strain Z1323HCJ0086]
MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTALFKEFPNSKIIIENKLSRYKQALSLRKELGKIDFSFA
FRSAFSSKIILHILKTKQRYFFDKNKHKEEHQVLKYLYFIENSLDIKAHFKDLKLPFKLKFKSPLVLKNGKKILGLNPGA
SFGSAKRWDASYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCNKTTIKTLCQNIAFCDLFITNDS
GPMHISAVYKVKTVAIFGPTKFTQTSPWQNQNARWVHLDLACMPCMQKTCPLKHHKCMKDLKPEVILKAIQNLTNI

Nucleotide


Download         Length: 951 bp        

>NTDB_id=951851 WHP83_RS04880 WP_002867402.1 937939..938889(-) (waaF) [Campylobacter jejuni strain Z1323HCJ0086]
ATGAAAATTTTTATACATCTTCCCACTTGGCTAGGCGATGCAGTGATGGCTTCACCTGCTTTATACGCTATAAAAGAACA
TTTTAAAAATGCCCAATTTATCCTTTATGGATCTTTGGTTTCCACAGCACTTTTTAAAGAATTTCCTAATTCTAAAATCA
TCATAGAAAATAAACTATCCCGTTATAAACAAGCTCTATCTTTACGCAAAGAACTTGGTAAGATCGATTTTAGCTTTGCT
TTTAGATCTGCGTTTTCTTCTAAGATTATCTTACATATTCTTAAAACAAAACAAAGATATTTTTTTGACAAAAACAAGCA
CAAAGAAGAACATCAAGTTTTAAAATACCTTTATTTTATAGAAAACTCACTTGACATAAAAGCTCATTTTAAAGACTTAA
AGCTTCCCTTTAAGCTAAAATTTAAAAGCCCTCTTGTCTTAAAAAATGGCAAAAAAATTCTAGGACTCAACCCTGGCGCA
AGCTTTGGAAGTGCAAAAAGATGGGATGCGAGTTATTTTGCTAAAGTGGCTTTAAATTTCAGCCAAAGTCATGAGATTTT
AATCTTTGGCGCAGGAAAAGCCGAACAAGAACTTTGTAATGAAATTTATCAAATTTTAAAAGAACAAAACATAAAAGTAA
AAAATCTTTGCAATAAAACCACTATCAAAACCCTTTGTCAAAATATCGCTTTTTGCGATCTTTTCATCACAAATGACAGT
GGACCTATGCACATAAGTGCGGTTTATAAGGTAAAAACCGTAGCTATTTTTGGCCCTACGAAATTTACTCAAACTTCACC
TTGGCAAAATCAAAATGCAAGATGGGTGCATTTAGATCTAGCTTGTATGCCTTGTATGCAAAAAACCTGCCCTTTAAAAC
ACCACAAATGCATGAAAGATTTAAAACCTGAAGTGATTTTAAAGGCAATTCAAAATTTAACTAATATCTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(96-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

92.652

99.051

0.918