Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   WHP83_RS03370 Genome accession   NZ_CP148154
Coordinates   629519..630127 (+) Length   202 a.a.
NCBI ID   WP_002851464.1    Uniprot ID   A0AB36GA54
Organism   Campylobacter jejuni strain Z1323HCJ0086     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 624519..635127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHP83_RS03360 (WHP83_03360) ctsR 627825..628136 (+) 312 WP_002855438.1 hypothetical protein Machinery gene
  WHP83_RS03365 (WHP83_03365) ctsD 628114..629526 (+) 1413 WP_002856543.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  WHP83_RS03370 (WHP83_03370) ctsP 629519..630127 (+) 609 WP_002851464.1 ATP-binding protein Machinery gene
  WHP83_RS03375 (WHP83_03375) ctsX 630131..630718 (+) 588 WP_002867245.1 hypothetical protein Machinery gene
  WHP83_RS03380 (WHP83_03380) ctsE 630708..632267 (+) 1560 WP_338851157.1 GspE/PulE family protein Machinery gene
  WHP83_RS03385 (WHP83_03385) ctsF 632264..633445 (+) 1182 WP_338851158.1 type II secretion system F family protein Machinery gene
  WHP83_RS03390 (WHP83_03390) - 633438..634202 (-) 765 WP_002855821.1 TSUP family transporter -
  WHP83_RS03395 (WHP83_03395) - 634206..634970 (-) 765 WP_002851318.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23742.78 Da        Isoelectric Point: 9.9955

>NTDB_id=951840 WHP83_RS03370 WP_002851464.1 629519..630127(+) (ctsP) [Campylobacter jejuni strain Z1323HCJ0086]
MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLAKKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILD
EVGMYDYAMLESIRIYSDSISFVLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
QGNLRYIDKTLKSFYEINSFFDKNKSQEYILKLSALENGLLR

Nucleotide


Download         Length: 609 bp        

>NTDB_id=951840 WHP83_RS03370 WP_002851464.1 629519..630127(+) (ctsP) [Campylobacter jejuni strain Z1323HCJ0086]
ATGAGTAAAATTATTCCATTTAGAGAAGAAATTTTTCATCAAATCAATCAAATTTTAGAAAGCCAAAAAGCTTTTATTTT
TTTATGGGGAAAAAGTGGTAGTGGTAAAAGTGTATTGTTGCAAAGATTGGCAAAAAAATATAATGTTGATTTTATTAATG
AAAATTTTAAAGATCAGAGTTTCTTAAAAGAAAAAATTGAGTTTTTGATTTCACAAGGTCAGAGTTTAATCATTCTTGAT
GAAGTGGGAATGTATGATTATGCAATGCTAGAAAGCATCAGGATTTATAGTGATTCTATAAGTTTTGTTTTAAGTTCTCA
TAAAAAGTTAAATATACTTAAAAAAGAGCATTTTAAAAGTCGTTTAAGTGCTTGTTTTAAATTGAAAAATATTAGTCTTT
TAGAACTTGATGATTATATTAAATTGAAATTCGGAATGAATTTTTCAAATAAATGTCTTAAGTTTTTACAAAAAATTTCT
CAAGGAAATTTAAGATATATTGATAAAACTTTAAAAAGTTTTTATGAGATAAATAGTTTTTTTGATAAAAACAAAAGTCA
AGAGTATATTTTAAAGCTTAGTGCTTTAGAGAATGGCTTATTAAGGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

99.505

100

0.995