Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilZ   Type   Machinery gene
Locus tag   ACH6CW_RS10105 Genome accession   NZ_CP172306
Coordinates   2165631..2165987 (+) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa strain pat0103     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2160631..2170987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6CW_RS10080 fabF 2160843..2162087 (+) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -
  ACH6CW_RS10085 pabC 2162087..2162902 (+) 816 WP_003091129.1 aminodeoxychorismate lyase -
  ACH6CW_RS10090 mltG 2162908..2163957 (+) 1050 WP_096248747.1 endolytic transglycosylase MltG -
  ACH6CW_RS10095 tmk 2163986..2164618 (+) 633 WP_260551476.1 dTMP kinase -
  ACH6CW_RS10100 - 2164611..2165597 (+) 987 WP_023875119.1 DNA polymerase III subunit delta' -
  ACH6CW_RS10105 pilZ 2165631..2165987 (+) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  ACH6CW_RS10110 - 2166002..2166778 (+) 777 WP_003091117.1 TatD family hydrolase -
  ACH6CW_RS10115 - 2167004..2168137 (-) 1134 WP_023875121.1 aminotransferase class V-fold PLP-dependent enzyme -
  ACH6CW_RS10120 - 2168223..2168861 (+) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  ACH6CW_RS10125 - 2169011..2169907 (+) 897 WP_023875122.1 radical SAM protein -
  ACH6CW_RS10130 - 2169972..2170604 (+) 633 WP_003091112.1 DUF4823 domain-containing protein -

Sequence

Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=951515 ACH6CW_RS10105 WP_003091119.1 2165631..2165987(+) (pilZ) [Pseudomonas aeruginosa strain pat0103]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=951515 ACH6CW_RS10105 WP_003091119.1 2165631..2165987(+) (pilZ) [Pseudomonas aeruginosa strain pat0103]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAACGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTTGGCGACGAGGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCGGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGTTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains

Predicted by InterProScan.

PilZ domain (PilZ)

(17-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449
  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449