Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACH6CW_RS06765 Genome accession   NZ_CP172306
Coordinates   1446149..1447153 (+) Length   334 a.a.
NCBI ID   WP_003113871.1    Uniprot ID   A0A0H2ZEU1
Organism   Pseudomonas aeruginosa strain pat0103     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1441149..1452153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6CW_RS06735 fghA 1441241..1442092 (+) 852 WP_003092349.1 S-formylglutathione hydrolase -
  ACH6CW_RS06740 ispF 1442163..1442636 (+) 474 WP_003092346.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACH6CW_RS06745 truD 1442633..1443700 (+) 1068 WP_003117490.1 tRNA pseudouridine(13) synthase TruD -
  ACH6CW_RS06750 surE 1443688..1444437 (+) 750 WP_003092341.1 5'/3'-nucleotidase SurE -
  ACH6CW_RS06755 - 1444470..1445105 (+) 636 WP_003098558.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  ACH6CW_RS06760 - 1445151..1446044 (+) 894 WP_031685471.1 peptidoglycan DD-metalloendopeptidase family protein -
  ACH6CW_RS06765 rpoS 1446149..1447153 (+) 1005 WP_003113871.1 RNA polymerase sigma factor RpoS Regulator
  ACH6CW_RS06770 fdxA 1447581..1447904 (-) 324 WP_003092272.1 ferredoxin FdxA -
  ACH6CW_RS06775 mutS 1447971..1450538 (-) 2568 WP_003122151.1 DNA mismatch repair protein MutS -
  ACH6CW_RS06780 - 1450664..1451671 (-) 1008 WP_043084174.1 TolB family protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 38235.38 Da        Isoelectric Point: 5.0478

>NTDB_id=951503 ACH6CW_RS06765 WP_003113871.1 1446149..1447153(+) (rpoS) [Pseudomonas aeruginosa strain pat0103]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=951503 ACH6CW_RS06765 WP_003113871.1 1446149..1447153(+) (rpoS) [Pseudomonas aeruginosa strain pat0103]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(179-253)

Sigma-70 region 2 (Sigma70_r2)

(99-168)

Sigma-70, region 4 (Sigma70_r4)

(267-320)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(61-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZEU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

66.463

98.204

0.653