Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACH6CW_RS02080 Genome accession   NZ_CP172306
Coordinates   446692..447057 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain pat0103     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 441692..452057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH6CW_RS02050 pyrR 442314..442826 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  ACH6CW_RS02055 ruvX 442938..443372 (-) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  ACH6CW_RS02060 - 443372..443941 (-) 570 WP_003084577.1 YqgE/AlgH family protein -
  ACH6CW_RS02065 - 443990..444883 (-) 894 WP_003084580.1 TonB family protein -
  ACH6CW_RS02070 gshB 445030..445983 (-) 954 WP_073657364.1 glutathione synthase -
  ACH6CW_RS02075 pilG 446238..446645 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  ACH6CW_RS02080 pilH 446692..447057 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  ACH6CW_RS02085 - 447108..447644 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  ACH6CW_RS02090 pilJ 447729..449777 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  ACH6CW_RS02095 pilK 449838..450713 (+) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=951492 ACH6CW_RS02080 WP_003084587.1 446692..447057(+) (pilH) [Pseudomonas aeruginosa strain pat0103]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=951492 ACH6CW_RS02080 WP_003084587.1 446692..447057(+) (pilH) [Pseudomonas aeruginosa strain pat0103]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364