Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   AABA08_RS08265 Genome accession   NZ_AP028602
Coordinates   1645687..1646397 (+) Length   236 a.a.
NCBI ID   WP_000760675.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1640687..1651397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS08250 (TKY092604_16380) - 1641228..1641476 (-) 249 WP_000364990.1 YneF family protein -
  AABA08_RS08255 (TKY092604_16390) treC 1641732..1643357 (-) 1626 WP_000171207.1 alpha,alpha-phosphotrehalase -
  AABA08_RS08260 (TKY092604_16400) treP 1643535..1645502 (-) 1968 WP_338168505.1 PTS system trehalose-specific EIIBC component -
  AABA08_RS08265 (TKY092604_16410) treR 1645687..1646397 (+) 711 WP_000760675.1 trehalose operon repressor Regulator
  AABA08_RS08270 - 1646552..1647886 (+) 1335 Protein_1638 ISL3 family transposase -
  AABA08_RS08275 (TKY092604_16440) - 1647961..1648887 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein -
  AABA08_RS08280 (TKY092604_16450) amiE 1648898..1649965 (-) 1068 WP_000159564.1 ABC transporter ATP-binding protein Regulator
  AABA08_RS08285 (TKY092604_16460) amiD 1649974..1650900 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27621.80 Da        Isoelectric Point: 8.9698

>NTDB_id=95147 AABA08_RS08265 WP_000760675.1 1645687..1646397(+) (treR) [Streptococcus pneumoniae strain PF2]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKEPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=95147 AABA08_RS08265 WP_000760675.1 1645687..1646397(+) (treR) [Streptococcus pneumoniae strain PF2]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTAATTCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGAACCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGACGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.746

100

0.597

Multiple sequence alignment