Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   ACH19Q_RS13285 Genome accession   NZ_CP172236
Coordinates   2813856..2814224 (-) Length   122 a.a.
NCBI ID   WP_003269243.1    Uniprot ID   Q8Y1M1
Organism   Ralstonia pseudosolanacearum strain UMN24-1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2808856..2819224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH19Q_RS13275 (ACH19Q_13275) - 2810775..2813006 (-) 2232 WP_011000626.1 methyl-accepting chemotaxis protein -
  ACH19Q_RS13280 (ACH19Q_13280) - 2813252..2813797 (-) 546 WP_028852678.1 chemotaxis protein CheW -
  ACH19Q_RS13285 (ACH19Q_13285) pilH 2813856..2814224 (-) 369 WP_003269243.1 response regulator Machinery gene
  ACH19Q_RS13290 (ACH19Q_13290) pilG 2814256..2814699 (-) 444 WP_071615340.1 response regulator Regulator
  ACH19Q_RS13295 (ACH19Q_13295) - 2815014..2815196 (-) 183 WP_003261842.1 rubredoxin -
  ACH19Q_RS13300 (ACH19Q_13300) hemL 2815408..2816709 (+) 1302 WP_011000623.1 glutamate-1-semialdehyde 2,1-aminomutase -
  ACH19Q_RS13305 (ACH19Q_13305) dapA 2816812..2817726 (-) 915 WP_197369510.1 4-hydroxy-tetrahydrodipicolinate synthase -
  ACH19Q_RS13310 (ACH19Q_13310) - 2817854..2818018 (-) 165 WP_162913632.1 hypothetical protein -
  ACH19Q_RS13315 (ACH19Q_13315) - 2818110..2818736 (+) 627 WP_016723449.1 LemA family protein -

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13482.73 Da        Isoelectric Point: 4.9328

>NTDB_id=951462 ACH19Q_RS13285 WP_003269243.1 2813856..2814224(-) (pilH) [Ralstonia pseudosolanacearum strain UMN24-1]
MAIKKILVVDDSPTEALFLSEILSKNGFKVSVAADSDQAMAKLEGEPFDLVLMDVVMPGQNGYQATRAIKKDDRFKDIPV
IICTTKGLETDRVWGMRQGASDYIVKPVKAEELLEKIAKLPQ

Nucleotide


Download         Length: 369 bp        

>NTDB_id=951462 ACH19Q_RS13285 WP_003269243.1 2813856..2814224(-) (pilH) [Ralstonia pseudosolanacearum strain UMN24-1]
ATGGCAATCAAAAAGATTCTGGTGGTTGATGACTCCCCCACCGAAGCACTGTTCCTGTCGGAAATCCTGAGCAAGAACGG
TTTCAAGGTGTCGGTCGCGGCCGACAGCGACCAGGCCATGGCCAAGCTGGAAGGCGAGCCTTTCGACCTGGTCCTGATGG
ACGTGGTGATGCCCGGCCAGAACGGCTACCAGGCCACCCGCGCGATCAAGAAGGACGATCGCTTCAAGGACATCCCGGTG
ATCATCTGCACCACCAAGGGCCTGGAGACCGACCGCGTGTGGGGCATGCGCCAGGGCGCGTCGGACTACATCGTCAAGCC
GGTCAAGGCAGAAGAGCTGCTCGAAAAGATCGCCAAGCTGCCGCAGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y1M1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

44.915

96.721

0.434