Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHO18_RS13710 Genome accession   NZ_CP148128
Coordinates   2608533..2609300 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2603533..2614300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS13690 ppsR 2603708..2604520 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHO18_RS13695 ccpN 2604546..2605184 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHO18_RS13700 glyS 2605317..2607356 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHO18_RS13705 glyQ 2607349..2608236 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHO18_RS13710 recO 2608533..2609300 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHO18_RS13715 yqzL 2609337..2609480 (-) 144 WP_003230053.1 YqzL family protein -
  WHO18_RS13720 era 2609628..2610533 (-) 906 WP_003230051.1 GTPase Era -
  WHO18_RS13725 cdd 2610514..2610924 (-) 411 WP_003230049.1 cytidine deaminase -
  WHO18_RS13730 unpK 2611043..2611414 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHO18_RS13735 ybeY 2611395..2611868 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHO18_RS13740 pgpH 2611869..2614004 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=951455 WHO18_RS13710 WP_003230055.1 2608533..2609300(-) (recO) [Bacillus subtilis isolate FELIX_MS620]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=951455 WHO18_RS13710 WP_003230055.1 2608533..2609300(-) (recO) [Bacillus subtilis isolate FELIX_MS620]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1