Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHO18_RS13180 Genome accession   NZ_CP148128
Coordinates   2517609..2518412 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2512609..2523412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS13155 glpQ 2513755..2514486 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WHO18_RS13160 yqiI 2514565..2515185 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WHO18_RS13165 yqiH 2515200..2515493 (-) 294 WP_003230284.1 lipoprotein -
  WHO18_RS13170 - 2515801..2515953 (+) 153 WP_003230276.1 hypothetical protein -
  WHO18_RS13175 yqiG 2516026..2517144 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WHO18_RS13180 spo0A 2517609..2518412 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHO18_RS13185 spoIVB 2518688..2519968 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WHO18_RS13190 recN 2520143..2521873 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WHO18_RS13195 argR 2521910..2522359 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WHO18_RS13200 yqxC 2522457..2523302 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=951444 WHO18_RS13180 WP_003226427.1 2517609..2518412(-) (spo0A) [Bacillus subtilis isolate FELIX_MS620]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=951444 WHO18_RS13180 WP_003226427.1 2517609..2518412(-) (spo0A) [Bacillus subtilis isolate FELIX_MS620]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1