Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHO18_RS12195 Genome accession   NZ_CP148128
Coordinates   2340396..2341016 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335396..2346016
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS12155 ypqE 2336527..2337033 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHO18_RS12160 ypqA 2337171..2337590 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHO18_RS12165 yppG 2337611..2337988 (-) 378 WP_004398696.1 YppG family protein -
  WHO18_RS12170 yppF 2338176..2338364 (+) 189 WP_003230690.1 YppF family protein -
  WHO18_RS12175 yppE 2338403..2338774 (-) 372 WP_003246080.1 YppE family protein -
  WHO18_RS12180 yppD 2338820..2339065 (-) 246 WP_004398488.1 YppD family protein -
  WHO18_RS12185 sspM 2339264..2339368 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHO18_RS12190 yppC 2339393..2340355 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHO18_RS12195 recU 2340396..2341016 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHO18_RS12200 ponA 2341038..2343782 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHO18_RS12205 ypoC 2343858..2344352 (-) 495 WP_009967579.1 YpoC family protein -
  WHO18_RS12210 nth 2344349..2345008 (-) 660 WP_009967580.1 endonuclease III -
  WHO18_RS12215 dnaD 2345027..2345725 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=951443 WHO18_RS12195 WP_004399067.1 2340396..2341016(+) (recU) [Bacillus subtilis isolate FELIX_MS620]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=951443 WHO18_RS12195 WP_004399067.1 2340396..2341016(+) (recU) [Bacillus subtilis isolate FELIX_MS620]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1