Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   ACH19Q_RS03805 Genome accession   NZ_CP172236
Coordinates   807700..808320 (-) Length   206 a.a.
NCBI ID   WP_011002444.1    Uniprot ID   Q8XWE6
Organism   Ralstonia pseudosolanacearum strain UMN24-1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 802700..813320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACH19Q_RS03775 (ACH19Q_03775) - 803198..803956 (-) 759 WP_019718335.1 3-hydroxyacyl-CoA dehydrogenase -
  ACH19Q_RS03780 (ACH19Q_03780) adk 804119..804787 (-) 669 WP_011002448.1 adenylate kinase -
  ACH19Q_RS03785 (ACH19Q_03785) kdsB 805107..805913 (-) 807 WP_011002447.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  ACH19Q_RS03790 (ACH19Q_03790) - 805932..806120 (-) 189 WP_003266270.1 Trm112 family protein -
  ACH19Q_RS03795 (ACH19Q_03795) lpxK 806181..807230 (-) 1050 WP_197369494.1 tetraacyldisaccharide 4'-kinase -
  ACH19Q_RS03800 (ACH19Q_03800) - 807246..807677 (-) 432 WP_011002445.1 ExbD/TolR family protein -
  ACH19Q_RS03805 (ACH19Q_03805) exbB 807700..808320 (-) 621 WP_011002444.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  ACH19Q_RS03810 (ACH19Q_03810) xseA 809945..811360 (+) 1416 WP_197383736.1 exodeoxyribonuclease VII large subunit -
  ACH19Q_RS03815 (ACH19Q_03815) sodB 811506..812084 (+) 579 WP_028853552.1 superoxide dismutase [Fe] -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22288.15 Da        Isoelectric Point: 9.3208

>NTDB_id=951439 ACH19Q_RS03805 WP_011002444.1 807700..808320(-) (exbB) [Ralstonia pseudosolanacearum strain UMN24-1]
MFSIIQAAGWPIWPLLIASVLALALIIERFVALQRKKIIPPKVYDEALAVAHQRKATPEVVNTLEQGSPLGRVLAAALRH
VVLHPATTREAAKEVVEEAGQNVAHRLERYLNALGTIASVAPLMGLFGTVVGMIEIFGSQTAAGTNPQTLAHGISVALYN
TALGLVVAIPTLIFWRYFRGVVDSYVVELEHLSATYLDAILPPRRG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=951439 ACH19Q_RS03805 WP_011002444.1 807700..808320(-) (exbB) [Ralstonia pseudosolanacearum strain UMN24-1]
GTGTTTTCCATCATCCAAGCCGCCGGCTGGCCGATCTGGCCGCTGCTGATTGCCTCGGTGCTCGCCCTGGCGCTCATCAT
CGAACGCTTCGTCGCCTTGCAGCGCAAGAAGATCATTCCTCCCAAGGTGTATGACGAGGCCCTGGCGGTGGCACACCAGC
GCAAGGCGACGCCGGAAGTCGTGAACACGCTGGAACAGGGCTCGCCGCTGGGCCGCGTGCTGGCCGCCGCACTGCGCCAC
GTGGTGCTGCATCCGGCCACCACGCGCGAAGCCGCCAAGGAAGTGGTGGAAGAAGCCGGTCAGAACGTCGCCCACCGCCT
GGAGCGCTACCTGAACGCACTCGGCACCATCGCCTCGGTGGCGCCGCTGATGGGTCTGTTCGGCACCGTGGTCGGCATGA
TCGAGATCTTCGGCAGCCAGACCGCCGCCGGCACCAACCCGCAGACGCTCGCGCACGGCATCTCGGTCGCGCTGTACAAC
ACGGCGCTGGGCCTGGTGGTGGCCATCCCGACGCTGATCTTCTGGCGCTACTTCCGTGGCGTGGTCGACAGCTACGTGGT
CGAACTCGAGCACCTGTCCGCCACGTACCTCGACGCGATCCTGCCGCCGCGGCGCGGCTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-190)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8XWE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

40.488

99.515

0.403