Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHO18_RS07990 Genome accession   NZ_CP148128
Coordinates   1517457..1517735 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate FELIX_MS620     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512457..1522735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO18_RS07970 - 1513644..1514555 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHO18_RS07975 ampS 1514589..1515821 (-) 1233 WP_003232341.1 aminopeptidase -
  WHO18_RS07980 ykpC 1515931..1516065 (-) 135 WP_003238865.1 protein YkpC -
  WHO18_RS07985 mreBH 1516166..1517173 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHO18_RS07990 abrB 1517457..1517735 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHO18_RS07995 kinC 1517925..1519211 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHO18_RS08000 ykqA 1519227..1520060 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHO18_RS08005 ktrC 1520123..1520788 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHO18_RS08010 ade 1520943..1522676 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=951438 WHO18_RS07990 WP_003244728.1 1517457..1517735(+) (abrB) [Bacillus subtilis isolate FELIX_MS620]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=951438 WHO18_RS07990 WP_003244728.1 1517457..1517735(+) (abrB) [Bacillus subtilis isolate FELIX_MS620]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576