Detailed information NTG0951413

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHP5D_RS22800
• Genome accession: NZ_CP172217
• Coordinates: 4536241..4537233 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GF4
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4531241..4542233

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHP5D_RS22770 (ACHP5D_22785)	ispD	4531302..4532012 (+)	711	WP_000246144.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHP5D_RS22775 (ACHP5D_22790)	ispF	4532012..4532491 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHP5D_RS22780 (ACHP5D_22795)	truD	4532488..4533537 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
ACHP5D_RS22785 (ACHP5D_22800)	surE	4533518..4534279 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACHP5D_RS22790 (ACHP5D_22805)	pcm	4534273..4534899 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHP5D_RS22795 (ACHP5D_22810)	nlpD	4535084..4536178 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACHP5D_RS22800 (ACHP5D_22815)	rpoS	4536241..4537233 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHP5D_RS22805 (ACHP5D_22820)	ygbN	4537327..4538691 (-)	1365	WP_000104459.1	GntP family transporter	-
ACHP5D_RS22810 (ACHP5D_22825)	ygbM	4538780..4539556 (-)	777	WP_001136925.1	HPr family phosphocarrier protein	-
ACHP5D_RS22815 (ACHP5D_22830)	ygbL	4539561..4540199 (-)	639	WP_001278994.1	aldolase	-
ACHP5D_RS22820 (ACHP5D_22835)	otnK	4540196..4541458 (-)	1263	WP_000590386.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=951413 ACHP5D_RS22800 WP_000081550.1 4536241..4537233(+) (rpoS) [Escherichia coli strain GF4]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=951413 ACHP5D_RS22800 WP_000081550.1 4536241..4537233(+) (rpoS) [Escherichia coli strain GF4]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715