Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHP5D_RS16715 Genome accession   NZ_CP172217
Coordinates   3287779..3288771 (-) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain GF4     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3282779..3293771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5D_RS16705 (ACHP5D_16720) yieP 3285671..3286363 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  ACHP5D_RS16710 (ACHP5D_16725) mdtD 3286386..3287813 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  ACHP5D_RS16715 (ACHP5D_16730) cytR 3287779..3288771 (-) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACHP5D_RS16720 (ACHP5D_16735) rbsK 3288775..3289704 (-) 930 WP_012767772.1 ribokinase -
  ACHP5D_RS16725 (ACHP5D_16740) rbsB 3289830..3290720 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACHP5D_RS16730 (ACHP5D_16745) rbsC 3290745..3291710 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  ACHP5D_RS16735 (ACHP5D_16750) rbsA 3291715..3293220 (-) 1506 WP_000387752.1 ribose ABC transporter ATP-binding protein RbsA -
  ACHP5D_RS16740 (ACHP5D_16755) rbsD 3293228..3293647 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=951386 ACHP5D_RS16715 WP_000224470.1 3287779..3288771(-) (cytR) [Escherichia coli strain GF4]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=951386 ACHP5D_RS16715 WP_000224470.1 3287779..3288771(-) (cytR) [Escherichia coli strain GF4]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364