Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHO38_RS19140 Genome accession   NZ_CP148124
Coordinates   3639858..3640580 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3634858..3645580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS19105 fliW 3634997..3635428 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHO38_RS19110 yviE 3635449..3636024 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHO38_RS19115 flgL 3636071..3636967 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHO38_RS19120 flgK 3636978..3638501 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHO38_RS19125 flgN 3638520..3639002 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHO38_RS19130 flgM 3639018..3639284 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHO38_RS19135 yvyF 3639365..3639784 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHO38_RS19140 comFC 3639858..3640580 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHO38_RS19145 comFB 3640544..3640840 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHO38_RS19150 comFA 3640900..3642291 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHO38_RS19155 fakBA 3642397..3643242 (-) 846 WP_003244125.1 DegV family protein -
  WHO38_RS19160 degU 3643340..3644029 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHO38_RS19165 degS 3644112..3645269 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=951343 WHO38_RS19140 WP_003227991.1 3639858..3640580(-) (comFC) [Bacillus subtilis isolate FELIX_MS521]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=951343 WHO38_RS19140 WP_003227991.1 3639858..3640580(-) (comFC) [Bacillus subtilis isolate FELIX_MS521]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1