Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHO38_RS13685 Genome accession   NZ_CP148124
Coordinates   2607678..2608445 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2602678..2613445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS13665 ppsR 2602853..2603665 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHO38_RS13670 ccpN 2603691..2604329 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHO38_RS13675 glyS 2604462..2606501 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHO38_RS13680 glyQ 2606494..2607381 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHO38_RS13685 recO 2607678..2608445 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHO38_RS13690 yqzL 2608482..2608625 (-) 144 WP_003230053.1 YqzL family protein -
  WHO38_RS13695 era 2608773..2609678 (-) 906 WP_003230051.1 GTPase Era -
  WHO38_RS13700 cdd 2609659..2610069 (-) 411 WP_003230049.1 cytidine deaminase -
  WHO38_RS13705 unpK 2610188..2610559 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHO38_RS13710 ybeY 2610540..2611013 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHO38_RS13715 pgpH 2611014..2613149 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=951323 WHO38_RS13685 WP_003230055.1 2607678..2608445(-) (recO) [Bacillus subtilis isolate FELIX_MS521]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=951323 WHO38_RS13685 WP_003230055.1 2607678..2608445(-) (recO) [Bacillus subtilis isolate FELIX_MS521]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1