Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   WHO38_RS13410 Genome accession   NZ_CP148124
Coordinates   2557738..2558808 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2552738..2563808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS13365 tapA 2553217..2553978 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHO38_RS13370 yqzG 2554250..2554576 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHO38_RS13375 spoIIT 2554618..2554797 (-) 180 WP_003230176.1 YqzE family protein -
  WHO38_RS13380 comGG 2554868..2555242 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHO38_RS13385 comGF 2555243..2555626 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHO38_RS13390 comGE 2555652..2555999 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHO38_RS13395 comGD 2555983..2556414 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHO38_RS13400 comGC 2556404..2556700 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  WHO38_RS13405 comGB 2556714..2557751 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  WHO38_RS13410 comGA 2557738..2558808 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  WHO38_RS13415 corA 2559220..2560173 (-) 954 WP_004399136.1 magnesium transporter CorA -
  WHO38_RS13420 yqhB 2560316..2561644 (+) 1329 WP_009967730.1 hemolysin family protein -
  WHO38_RS13425 rsbRD 2561697..2562533 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -
  WHO38_RS13435 mgsR 2562757..2563137 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  WHO38_RS13440 yqgY 2563369..2563614 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=951322 WHO38_RS13410 WP_004399124.1 2557738..2558808(-) (comGA) [Bacillus subtilis isolate FELIX_MS521]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=951322 WHO38_RS13410 WP_004399124.1 2557738..2558808(-) (comGA) [Bacillus subtilis isolate FELIX_MS521]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGACTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGTTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGACAGTCAC
GAAATACTAGGAGAGCTAGCGTTTATGAGCTTCTATACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATTTAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1