Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   WHO38_RS13155 Genome accession   NZ_CP148124
Coordinates   2516754..2517557 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511754..2522557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS13130 glpQ 2512900..2513631 (-) 732 WP_003230288.1 glycerophosphodiester phosphodiesterase -
  WHO38_RS13135 yqiI 2513710..2514330 (-) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  WHO38_RS13140 yqiH 2514345..2514638 (-) 294 WP_003230284.1 lipoprotein -
  WHO38_RS13145 - 2514946..2515098 (+) 153 WP_003230276.1 hypothetical protein -
  WHO38_RS13150 yqiG 2515171..2516289 (+) 1119 WP_004398691.1 NADH-dependent flavin oxidoreductase -
  WHO38_RS13155 spo0A 2516754..2517557 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  WHO38_RS13160 spoIVB 2517833..2519113 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  WHO38_RS13165 recN 2519288..2521018 (-) 1731 WP_003230267.1 DNA repair protein RecN Machinery gene
  WHO38_RS13170 argR 2521055..2521504 (-) 450 WP_003230265.1 arginine repressor ArgR -
  WHO38_RS13175 yqxC 2521602..2522447 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=951312 WHO38_RS13155 WP_003226427.1 2516754..2517557(-) (spo0A) [Bacillus subtilis isolate FELIX_MS521]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=951312 WHO38_RS13155 WP_003226427.1 2516754..2517557(-) (spo0A) [Bacillus subtilis isolate FELIX_MS521]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATCTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCTACCAACAGTGAATTCATTGCAATGGTTGCGGATAAGCTGAGGTTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1