Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHO38_RS12170 Genome accession   NZ_CP148124
Coordinates   2339541..2340161 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2334541..2345161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS12130 ypqE 2335672..2336178 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHO38_RS12135 ypqA 2336316..2336735 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHO38_RS12140 yppG 2336756..2337133 (-) 378 WP_004398696.1 YppG family protein -
  WHO38_RS12145 yppF 2337321..2337509 (+) 189 WP_003230690.1 YppF family protein -
  WHO38_RS12150 yppE 2337548..2337919 (-) 372 WP_003246080.1 YppE family protein -
  WHO38_RS12155 yppD 2337965..2338210 (-) 246 WP_004398488.1 YppD family protein -
  WHO38_RS12160 sspM 2338409..2338513 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHO38_RS12165 yppC 2338538..2339500 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHO38_RS12170 recU 2339541..2340161 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHO38_RS12175 ponA 2340183..2342927 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHO38_RS12180 ypoC 2343003..2343497 (-) 495 WP_009967579.1 YpoC family protein -
  WHO38_RS12185 nth 2343494..2344153 (-) 660 WP_009967580.1 endonuclease III -
  WHO38_RS12190 dnaD 2344172..2344870 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=951311 WHO38_RS12170 WP_004399067.1 2339541..2340161(+) (recU) [Bacillus subtilis isolate FELIX_MS521]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=951311 WHO38_RS12170 WP_004399067.1 2339541..2340161(+) (recU) [Bacillus subtilis isolate FELIX_MS521]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1