Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACHP5E_RS18020 Genome accession   NZ_CP172212
Coordinates   3687474..3688466 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain GF8     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3682474..3693466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5E_RS17995 (ACHP5E_17995) ygbN 3683129..3684493 (+) 1365 WP_000104439.1 GntP family transporter -
  ACHP5E_RS18000 (ACHP5E_18000) - 3684532..3684768 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ACHP5E_RS18005 (ACHP5E_18005) - 3684779..3686206 (-) 1428 WP_021578698.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ACHP5E_RS18010 (ACHP5E_18010) - 3686206..3686799 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ACHP5E_RS18015 (ACHP5E_18015) - 3686946..3687353 (+) 408 WP_001208072.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHP5E_RS18020 (ACHP5E_18020) rpoS 3687474..3688466 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ACHP5E_RS18025 (ACHP5E_18025) nlpD 3688529..3689623 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  ACHP5E_RS18030 (ACHP5E_18030) pcm 3689808..3690434 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ACHP5E_RS18035 (ACHP5E_18035) surE 3690428..3691189 (-) 762 WP_057697505.1 5'/3'-nucleotidase SurE -
  ACHP5E_RS18040 (ACHP5E_18040) truD 3691170..3692219 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  ACHP5E_RS18045 (ACHP5E_18045) ispF 3692216..3692695 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACHP5E_RS18050 (ACHP5E_18050) ispD 3692695..3693405 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=951306 ACHP5E_RS18020 WP_000081550.1 3687474..3688466(-) (rpoS) [Escherichia coli strain GF8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=951306 ACHP5E_RS18020 WP_000081550.1 3687474..3688466(-) (rpoS) [Escherichia coli strain GF8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715