Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHO38_RS07970 Genome accession   NZ_CP148124
Coordinates   1516602..1516880 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate FELIX_MS521     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511602..1521880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO38_RS07950 - 1512789..1513700 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHO38_RS07955 ampS 1513734..1514966 (-) 1233 WP_003232341.1 aminopeptidase -
  WHO38_RS07960 ykpC 1515076..1515210 (-) 135 WP_003238865.1 protein YkpC -
  WHO38_RS07965 mreBH 1515311..1516318 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHO38_RS07970 abrB 1516602..1516880 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHO38_RS07975 kinC 1517070..1518356 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHO38_RS07980 ykqA 1518372..1519205 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHO38_RS07985 ktrC 1519268..1519933 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHO38_RS07990 ade 1520088..1521821 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=951306 WHO38_RS07970 WP_003244728.1 1516602..1516880(+) (abrB) [Bacillus subtilis isolate FELIX_MS521]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=951306 WHO38_RS07970 WP_003244728.1 1516602..1516880(+) (abrB) [Bacillus subtilis isolate FELIX_MS521]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576