Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHO22_RS13705 Genome accession   NZ_CP148122
Coordinates   2608458..2609225 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2603458..2614225
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS13685 ppsR 2603633..2604445 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHO22_RS13690 ccpN 2604471..2605109 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHO22_RS13695 glyS 2605242..2607281 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHO22_RS13700 glyQ 2607274..2608161 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHO22_RS13705 recO 2608458..2609225 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHO22_RS13710 yqzL 2609262..2609405 (-) 144 WP_003230053.1 YqzL family protein -
  WHO22_RS13715 era 2609553..2610458 (-) 906 WP_003230051.1 GTPase Era -
  WHO22_RS13720 cdd 2610439..2610849 (-) 411 WP_003230049.1 cytidine deaminase -
  WHO22_RS13725 unpK 2610968..2611339 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHO22_RS13730 ybeY 2611320..2611793 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHO22_RS13735 pgpH 2611794..2613929 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=951237 WHO22_RS13705 WP_003230055.1 2608458..2609225(-) (recO) [Bacillus subtilis isolate FELIX_MS513]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=951237 WHO22_RS13705 WP_003230055.1 2608458..2609225(-) (recO) [Bacillus subtilis isolate FELIX_MS513]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1