Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WHO22_RS13370 Genome accession   NZ_CP148122
Coordinates   2552164..2552499 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2547164..2557499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS13350 gcvT 2547756..2548844 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  WHO22_RS13355 yqhH 2549286..2550959 (+) 1674 WP_004398544.1 SNF2-related protein -
  WHO22_RS13360 yqhG 2550980..2551774 (+) 795 WP_003230200.1 YqhG family protein -
  WHO22_RS13365 sinI 2551957..2552130 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHO22_RS13370 sinR 2552164..2552499 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHO22_RS13375 tasA 2552592..2553377 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHO22_RS13380 sipW 2553441..2554013 (-) 573 WP_003246088.1 signal peptidase I -
  WHO22_RS13385 tapA 2553997..2554758 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHO22_RS13390 yqzG 2555030..2555356 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHO22_RS13395 spoIIT 2555398..2555577 (-) 180 WP_003230176.1 YqzE family protein -
  WHO22_RS13400 comGG 2555648..2556022 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHO22_RS13405 comGF 2556023..2556406 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHO22_RS13410 comGE 2556432..2556779 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHO22_RS13415 comGD 2556763..2557194 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHO22_RS13420 comGC 2557184..2557480 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=951229 WHO22_RS13370 WP_003226345.1 2552164..2552499(+) (sinR) [Bacillus subtilis isolate FELIX_MS513]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=951229 WHO22_RS13370 WP_003226345.1 2552164..2552499(+) (sinR) [Bacillus subtilis isolate FELIX_MS513]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1