Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHO22_RS12190 Genome accession   NZ_CP148122
Coordinates   2340321..2340941 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335321..2345941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS12150 ypqE 2336452..2336958 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHO22_RS12155 ypqA 2337096..2337515 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHO22_RS12160 yppG 2337536..2337913 (-) 378 WP_004398696.1 YppG family protein -
  WHO22_RS12165 yppF 2338101..2338289 (+) 189 WP_003230690.1 YppF family protein -
  WHO22_RS12170 yppE 2338328..2338699 (-) 372 WP_003246080.1 YppE family protein -
  WHO22_RS12175 yppD 2338745..2338990 (-) 246 WP_004398488.1 YppD family protein -
  WHO22_RS12180 sspM 2339189..2339293 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHO22_RS12185 yppC 2339318..2340280 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHO22_RS12190 recU 2340321..2340941 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHO22_RS12195 ponA 2340963..2343707 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHO22_RS12200 ypoC 2343783..2344277 (-) 495 WP_009967579.1 YpoC family protein -
  WHO22_RS12205 nth 2344274..2344933 (-) 660 WP_009967580.1 endonuclease III -
  WHO22_RS12210 dnaD 2344952..2345650 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=951225 WHO22_RS12190 WP_004399067.1 2340321..2340941(+) (recU) [Bacillus subtilis isolate FELIX_MS513]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=951225 WHO22_RS12190 WP_004399067.1 2340321..2340941(+) (recU) [Bacillus subtilis isolate FELIX_MS513]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1