Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHO22_RS07985 Genome accession   NZ_CP148122
Coordinates   1517382..1517660 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512382..1522660
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS07965 - 1513569..1514480 (+) 912 WP_338885850.1 ketopantoate reductase family protein -
  WHO22_RS07970 ampS 1514514..1515746 (-) 1233 WP_003232341.1 aminopeptidase -
  WHO22_RS07975 ykpC 1515856..1515990 (-) 135 WP_003238865.1 protein YkpC -
  WHO22_RS07980 mreBH 1516091..1517098 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHO22_RS07985 abrB 1517382..1517660 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHO22_RS07990 kinC 1517850..1519136 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHO22_RS07995 ykqA 1519152..1519985 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHO22_RS08000 ktrC 1520048..1520713 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHO22_RS08005 ade 1520868..1522601 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=951220 WHO22_RS07985 WP_003244728.1 1517382..1517660(+) (abrB) [Bacillus subtilis isolate FELIX_MS513]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=951220 WHO22_RS07985 WP_003244728.1 1517382..1517660(+) (abrB) [Bacillus subtilis isolate FELIX_MS513]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576