Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   WHO22_RS06250 Genome accession   NZ_CP148122
Coordinates   1206213..1207166 (+) Length   317 a.a.
NCBI ID   WP_003245494.1    Uniprot ID   A0AAE2SG99
Organism   Bacillus subtilis isolate FELIX_MS513     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1201213..1212166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO22_RS06225 argF 1203045..1204004 (+) 960 WP_003232980.1 ornithine carbamoyltransferase -
  WHO22_RS06230 yjzC 1204090..1204269 (+) 180 WP_003245356.1 YjzC family protein -
  WHO22_RS06235 yjzD 1204315..1204500 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  WHO22_RS06240 - 1204749..1205483 (+) 735 WP_003245223.1 hypothetical protein -
  WHO22_RS06245 - 1205565..1206122 (+) 558 WP_003232974.1 hypothetical protein -
  WHO22_RS06250 med 1206213..1207166 (+) 954 WP_003245494.1 transcriptional regulator Med Regulator
  WHO22_RS06255 comZ 1207181..1207372 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  WHO22_RS06260 yjzB 1207402..1207641 (-) 240 WP_003232972.1 spore coat protein YjzB -
  WHO22_RS06265 fabH 1207806..1208744 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  WHO22_RS06270 fabF 1208767..1210008 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  WHO22_RS06275 yjaZ 1210084..1210869 (+) 786 WP_003232967.1 DUF2268 domain-containing protein -
  WHO22_RS06280 appD 1211061..1212047 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.80 Da        Isoelectric Point: 4.5457

>NTDB_id=951209 WHO22_RS06250 WP_003245494.1 1206213..1207166(+) (med) [Bacillus subtilis isolate FELIX_MS513]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDQDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=951209 WHO22_RS06250 WP_003245494.1 1206213..1207166(+) (med) [Bacillus subtilis isolate FELIX_MS513]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACAAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATAGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAACACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGATC
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

100

100

1