Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   WHO59_RS13405 Genome accession   NZ_CP148120
Coordinates   2557248..2558285 (-) Length   345 a.a.
NCBI ID   WP_009967727.1    Uniprot ID   A0AAE2SM96
Organism   Bacillus subtilis isolate FELIX_MS512     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2552248..2563285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO59_RS13355 tasA 2552346..2553131 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHO59_RS13360 sipW 2553195..2553767 (-) 573 WP_003246088.1 signal peptidase I -
  WHO59_RS13365 tapA 2553751..2554512 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHO59_RS13370 yqzG 2554784..2555110 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHO59_RS13375 spoIIT 2555152..2555331 (-) 180 WP_003230176.1 YqzE family protein -
  WHO59_RS13380 comGG 2555402..2555776 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHO59_RS13385 comGF 2555777..2556160 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHO59_RS13390 comGE 2556186..2556533 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHO59_RS13395 comGD 2556517..2556948 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHO59_RS13400 comGC 2556938..2557234 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene
  WHO59_RS13405 comGB 2557248..2558285 (-) 1038 WP_009967727.1 comG operon protein ComGB Machinery gene
  WHO59_RS13410 comGA 2558272..2559342 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  WHO59_RS13415 corA 2559754..2560707 (-) 954 WP_004399136.1 magnesium transporter CorA -
  WHO59_RS13420 yqhB 2560850..2562178 (+) 1329 WP_009967730.1 hemolysin family protein -
  WHO59_RS13425 rsbRD 2562231..2563067 (-) 837 WP_004398754.1 RsbT co-antagonist protein RsbRD -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39762.26 Da        Isoelectric Point: 9.6257

>NTDB_id=951149 WHO59_RS13405 WP_009967727.1 2557248..2558285(-) (comGB) [Bacillus subtilis isolate FELIX_MS512]
MKKIRKVWLLKDQARLLKRLGEMTAGGYTLLDGLRLMELQMNKRQAADLTDSVTCLREGAPFYQVLKSLSFHKEAVGICY
FAETHGELPASMIQSGELLERKIAQADQLKRVLRYPLFLIFTVAVMFYMLQSIIIPQFSGIYQSMNMETSRSTDMLFAFF
QHIDLVIILLVLFTAGIGIYYWLVFKKKSPARQMLICIRIPLVGKLVKLFNSYFFSLQLSSLLKSGLSIYDSLNAFKHQT
FLPFYRCEAEQLIERLKAGESIESAICGSLFYETDLSKVISHGQLSGRLDRELFTYSQFILQRLEHKAQKWTGILQPMIY
GFVAAMILLVYLSMLVPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=951149 WHO59_RS13405 WP_009967727.1 2557248..2558285(-) (comGB) [Bacillus subtilis isolate FELIX_MS512]
ATGAAAAAGATTAGAAAAGTCTGGTTGTTAAAGGATCAAGCCAGGTTATTAAAGAGGCTCGGTGAAATGACTGCGGGCGG
ATATACACTTCTGGATGGATTACGCCTGATGGAACTTCAGATGAATAAGAGGCAGGCGGCTGACTTGACTGATTCGGTCA
CTTGTTTGAGGGAAGGGGCTCCGTTTTATCAAGTACTAAAGAGTTTGTCATTTCATAAGGAAGCCGTAGGTATTTGTTAT
TTTGCTGAAACACATGGTGAACTGCCTGCTTCAATGATCCAGAGCGGAGAGCTGCTGGAACGAAAAATTGCACAGGCAGA
CCAGCTGAAAAGAGTGCTGCGCTATCCGCTTTTCCTCATCTTTACGGTCGCTGTCATGTTTTATATGTTACAGTCCATCA
TCATTCCTCAGTTTTCCGGTATCTATCAATCGATGAATATGGAAACCTCACGTTCAACCGATATGCTTTTTGCTTTTTTT
CAGCATATTGATCTTGTGATCATTTTGCTTGTTCTTTTTACAGCAGGTATCGGGATTTATTATTGGCTTGTGTTTAAGAA
AAAATCACCTGCCCGGCAAATGCTGATTTGTATCAGGATTCCTTTGGTTGGAAAGCTTGTAAAGCTGTTTAACAGCTACT
TTTTTTCTTTGCAGCTAAGCAGCCTTTTAAAATCAGGCCTCTCAATTTATGACAGCCTTAATGCATTTAAACATCAAACG
TTTCTCCCTTTCTACCGCTGCGAGGCTGAACAATTGATTGAACGGCTAAAAGCCGGTGAGTCAATTGAATCCGCTATTTG
TGGAAGCCTTTTTTATGAAACTGATTTATCAAAAGTCATATCTCACGGCCAGCTGAGCGGCCGATTGGATCGGGAGCTTT
TCACATACAGCCAATTCATATTACAGCGGCTGGAACACAAAGCGCAAAAATGGACAGGCATCCTTCAGCCAATGATTTAT
GGATTTGTTGCAGCGATGATCTTACTTGTGTATTTATCTATGCTTGTGCCTATGTATCAGATGATGAATCAAATGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(17-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

100

93.623

0.936