Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   ACHP5G_RS18005 Genome accession   NZ_CP172203
Coordinates   3685842..3686834 (-) Length   330 a.a.
NCBI ID   WP_000081550.1    Uniprot ID   A0A370V765
Organism   Escherichia coli strain GF161     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3680842..3691834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5G_RS17980 (ACHP5G_17980) ygbN 3681497..3682861 (+) 1365 WP_000104439.1 GntP family transporter -
  ACHP5G_RS17985 (ACHP5G_17985) - 3682900..3683136 (-) 237 WP_000562984.1 non-oxidative hydroxyarylic acid decarboxylases subunit D -
  ACHP5G_RS17990 (ACHP5G_17990) - 3683147..3684574 (-) 1428 WP_021578698.1 non-oxidative hydroxyarylic acid decarboxylases subunit C -
  ACHP5G_RS17995 (ACHP5G_17995) - 3684574..3685167 (-) 594 WP_000767718.1 non-oxidative hydroxyarylic acid decarboxylases subunit B -
  ACHP5G_RS18000 (ACHP5G_18000) - 3685314..3685721 (+) 408 WP_001208072.1 MarR family winged helix-turn-helix transcriptional regulator -
  ACHP5G_RS18005 (ACHP5G_18005) rpoS 3685842..3686834 (-) 993 WP_000081550.1 RNA polymerase sigma factor RpoS Regulator
  ACHP5G_RS18010 (ACHP5G_18010) nlpD 3686897..3687991 (-) 1095 WP_306174120.1 murein hydrolase activator NlpD -
  ACHP5G_RS18015 (ACHP5G_18015) pcm 3688176..3688802 (-) 627 WP_000254708.1 protein-L-isoaspartate O-methyltransferase -
  ACHP5G_RS18020 (ACHP5G_18020) surE 3688796..3689557 (-) 762 WP_057697505.1 5'/3'-nucleotidase SurE -
  ACHP5G_RS18025 (ACHP5G_18025) truD 3689538..3690587 (-) 1050 WP_000568943.1 tRNA pseudouridine(13) synthase TruD -
  ACHP5G_RS18030 (ACHP5G_18030) ispF 3690584..3691063 (-) 480 WP_001219242.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  ACHP5G_RS18035 (ACHP5G_18035) ispD 3691063..3691773 (-) 711 WP_000246138.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 37972.84 Da        Isoelectric Point: 4.5597

>NTDB_id=951146 ACHP5G_RS18005 WP_000081550.1 3685842..3686834(-) (rpoS) [Escherichia coli strain GF161]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide


Download         Length: 993 bp        

>NTDB_id=951146 ACHP5G_RS18005 WP_000081550.1 3685842..3686834(-) (rpoS) [Escherichia coli strain GF161]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCGACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGATGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTACAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(174-248)

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-88)

Sigma-70, region 4 (Sigma70_r4)

(262-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V765

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

73.065

97.879

0.715