Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHO64_RS19140 Genome accession   NZ_CP148117
Coordinates   3640419..3641141 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis isolate FELIX_MS509     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3635419..3646141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO64_RS19105 fliW 3635558..3635989 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHO64_RS19110 yviE 3636010..3636585 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHO64_RS19115 flgL 3636632..3637528 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHO64_RS19120 flgK 3637539..3639062 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHO64_RS19125 flgN 3639081..3639563 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHO64_RS19130 flgM 3639579..3639845 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHO64_RS19135 yvyF 3639926..3640345 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHO64_RS19140 comFC 3640419..3641141 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHO64_RS19145 comFB 3641105..3641401 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHO64_RS19150 comFA 3641461..3642852 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHO64_RS19155 fakBA 3642958..3643803 (-) 846 WP_003244125.1 DegV family protein -
  WHO64_RS19160 degU 3643901..3644590 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHO64_RS19165 degS 3644673..3645830 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=951063 WHO64_RS19140 WP_003227991.1 3640419..3641141(-) (comFC) [Bacillus subtilis isolate FELIX_MS509]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=951063 WHO64_RS19140 WP_003227991.1 3640419..3641141(-) (comFC) [Bacillus subtilis isolate FELIX_MS509]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1