Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   AABA08_RS02585 Genome accession   NZ_AP028602
Coordinates   514044..514310 (+) Length   88 a.a.
NCBI ID   WP_001808618.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 509044..519310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS02565 (TKY092604_04990) - 509259..509768 (+) 510 WP_000619950.1 GNAT family N-acetyltransferase -
  AABA08_RS02570 (TKY092604_05000) pheT 509845..512247 (+) 2403 WP_000961560.1 phenylalanine--tRNA ligase subunit beta -
  AABA08_RS02575 (TKY092604_05010) - 512315..513316 (-) 1002 WP_054363430.1 endonuclease/exonuclease/phosphatase family protein -
  AABA08_RS02580 (TKY092604_05020) - 513472..513960 (+) 489 Protein_509 transposase -
  AABA08_RS02585 (TKY092604_05030) HI0659 514044..514310 (+) 267 WP_001808618.1 helix-turn-helix domain-containing protein Machinery gene
  AABA08_RS02590 (TKY092604_05040) metE 514571..516820 (+) 2250 WP_000108274.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -
  AABA08_RS02595 (TKY092604_05050) metF 516884..517750 (+) 867 WP_000089976.1 methylenetetrahydrofolate reductase [NAD(P)H] -
  AABA08_RS02600 - 517932..518204 (-) 273 WP_000857732.1 hypothetical protein -

Sequence

Protein


Download         Length: 88 a.a.        Molecular weight: 9622.15 Da        Isoelectric Point: 4.4893

>NTDB_id=95096 AABA08_RS02585 WP_001808618.1 514044..514310(+) (HI0659) [Streptococcus pneumoniae strain PF2]
MEGCPSELFSKEEILESDMRVAIMSELIEARYEQGISQKKLEEVSGISQPVIARMETGKTSPQLDTVLKVLASLGKTLAI
VPLEQGKS

Nucleotide


Download         Length: 267 bp        

>NTDB_id=95096 AABA08_RS02585 WP_001808618.1 514044..514310(+) (HI0659) [Streptococcus pneumoniae strain PF2]
TTGGAAGGATGTCCATCTGAGCTCTTTAGCAAGGAGGAAATCCTTGAAAGTGATATGCGAGTGGCTATCATGAGCGAGTT
GATTGAGGCTAGGTATGAACAAGGAATCAGTCAGAAAAAGCTGGAAGAAGTCAGTGGAATAAGCCAGCCTGTCATAGCTA
GGATGGAGACAGGAAAGACTAGTCCTCAGTTGGATACAGTCTTAAAAGTCCTAGCCAGTTTAGGAAAGACACTAGCAATC
GTCCCACTTGAACAGGGAAAAAGTTGA

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(29-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

61.039

87.5

0.534

Multiple sequence alignment