Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHO62_RS07970 Genome accession   NZ_CP148114
Coordinates   1516875..1517153 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1511875..1522153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS07950 - 1513062..1513973 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHO62_RS07955 ampS 1514007..1515239 (-) 1233 WP_003232341.1 aminopeptidase -
  WHO62_RS07960 ykpC 1515349..1515483 (-) 135 WP_003238865.1 protein YkpC -
  WHO62_RS07965 mreBH 1515584..1516591 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHO62_RS07970 abrB 1516875..1517153 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHO62_RS07975 kinC 1517343..1518629 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHO62_RS07980 ykqA 1518645..1519478 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHO62_RS07985 ktrC 1519541..1520206 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHO62_RS07990 ade 1520361..1522094 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=950918 WHO62_RS07970 WP_003244728.1 1516875..1517153(+) (abrB) [Bacillus subtilis isolate FELIX_MS506]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=950918 WHO62_RS07970 WP_003244728.1 1516875..1517153(+) (abrB) [Bacillus subtilis isolate FELIX_MS506]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576