Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHO62_RS05785 Genome accession   NZ_CP148114
Coordinates   1116111..1116689 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111111..1121689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS05765 hemAT 1111622..1112920 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WHO62_RS05770 yhfW 1113059..1114588 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  WHO62_RS05775 yhxC 1114700..1115557 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WHO62_RS05780 yhzC 1115585..1115818 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WHO62_RS05785 comK 1116111..1116689 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WHO62_RS05790 yhxD 1116736..1117635 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WHO62_RS05795 yhjA 1117852..1118121 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WHO62_RS05800 yhjB 1118164..1119633 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WHO62_RS05805 yhjC 1119630..1119830 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WHO62_RS05810 - 1120038..1120400 (-) 363 WP_003233132.1 hypothetical protein -
  WHO62_RS05815 yhjE 1120552..1121175 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WHO62_RS05820 lepB 1121177..1121683 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=950904 WHO62_RS05785 WP_003245329.1 1116111..1116689(+) (comK) [Bacillus subtilis isolate FELIX_MS506]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=950904 WHO62_RS05785 WP_003245329.1 1116111..1116689(+) (comK) [Bacillus subtilis isolate FELIX_MS506]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1