Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   WHO62_RS01980 Genome accession   NZ_CP148114
Coordinates   371752..372201 (-) Length   149 a.a.
NCBI ID   WP_003246436.1    Uniprot ID   A0AAE2SFQ0
Organism   Bacillus subtilis isolate FELIX_MS506     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366752..377201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO62_RS01945 yckA 366903..367583 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  WHO62_RS01950 yckB 367593..368456 (-) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  WHO62_RS01955 - 368618..368815 (+) 198 WP_119122841.1 hypothetical protein -
  WHO62_RS01960 yckC 368834..369289 (+) 456 WP_003246356.1 RDD family protein -
  WHO62_RS01965 yckD 369371..369703 (+) 333 WP_003246247.1 YckD family protein -
  WHO62_RS01970 bglC 369857..371290 (+) 1434 WP_003246242.1 6-phospho-beta-glucosidase -
  WHO62_RS01975 nin/comJ 371327..371725 (-) 399 WP_003246342.1 DNA-entry nuclease inhibitor Regulator
  WHO62_RS01980 nucA/comI 371752..372201 (-) 450 WP_003246436.1 DNA-entry nuclease Machinery gene
  WHO62_RS01985 tlpC 372369..374090 (-) 1722 WP_003246498.1 methyl-accepting chemotaxis protein TlpC -
  WHO62_RS01990 hxlB 374201..374758 (-) 558 WP_003246343.1 6-phospho-3-hexuloisomerase -
  WHO62_RS01995 hxlA 374764..375396 (-) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  WHO62_RS02000 hxlR 375629..375991 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16486.48 Da        Isoelectric Point: 4.6274

>NTDB_id=950888 WHO62_RS01980 WP_003246436.1 371752..372201(-) (nucA/comI) [Bacillus subtilis isolate FELIX_MS506]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSADQKTSQTKEYDETMAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHRLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=950888 WHO62_RS01980 WP_003246436.1 371752..372201(-) (nucA/comI) [Bacillus subtilis isolate FELIX_MS506]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATGGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAAGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
GGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

100

100

1