Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   WHO32_RS13705 Genome accession   NZ_CP148112
Coordinates   2608534..2609301 (-) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2603534..2614301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS13685 ppsR 2603709..2604521 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  WHO32_RS13690 ccpN 2604547..2605185 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  WHO32_RS13695 glyS 2605318..2607357 (-) 2040 WP_003230059.1 glycine--tRNA ligase subunit beta -
  WHO32_RS13700 glyQ 2607350..2608237 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  WHO32_RS13705 recO 2608534..2609301 (-) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  WHO32_RS13710 yqzL 2609338..2609481 (-) 144 WP_003230053.1 YqzL family protein -
  WHO32_RS13715 era 2609629..2610534 (-) 906 WP_003230051.1 GTPase Era -
  WHO32_RS13720 cdd 2610515..2610925 (-) 411 WP_003230049.1 cytidine deaminase -
  WHO32_RS13725 unpK 2611044..2611415 (-) 372 WP_004398824.1 diacylglycerol kinase family protein -
  WHO32_RS13730 ybeY 2611396..2611869 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  WHO32_RS13735 pgpH 2611870..2614005 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=950849 WHO32_RS13705 WP_003230055.1 2608534..2609301(-) (recO) [Bacillus subtilis isolate FELIX_MS504]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=950849 WHO32_RS13705 WP_003230055.1 2608534..2609301(-) (recO) [Bacillus subtilis isolate FELIX_MS504]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1