Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   WHO32_RS07990 Genome accession   NZ_CP148112
Coordinates   1517458..1517736 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1512458..1522736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS07970 - 1513645..1514556 (+) 912 WP_003245639.1 ketopantoate reductase family protein -
  WHO32_RS07975 ampS 1514590..1515822 (-) 1233 WP_003232341.1 aminopeptidase -
  WHO32_RS07980 ykpC 1515932..1516066 (-) 135 WP_003238865.1 protein YkpC -
  WHO32_RS07985 mreBH 1516167..1517174 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  WHO32_RS07990 abrB 1517458..1517736 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  WHO32_RS07995 kinC 1517926..1519212 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  WHO32_RS08000 ykqA 1519228..1520061 (+) 834 WP_003245146.1 gamma-glutamylcyclotransferase -
  WHO32_RS08005 ktrC 1520124..1520789 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  WHO32_RS08010 ade 1520944..1522677 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=950832 WHO32_RS07990 WP_003244728.1 1517458..1517736(+) (abrB) [Bacillus subtilis isolate FELIX_MS504]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=950832 WHO32_RS07990 WP_003244728.1 1517458..1517736(+) (abrB) [Bacillus subtilis isolate FELIX_MS504]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576