Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   WHO32_RS07870 Genome accession   NZ_CP148112
Coordinates   1493380..1493955 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1488380..1498955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS07840 dapD 1488566..1489276 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  WHO32_RS07845 dapI 1489346..1490470 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  WHO32_RS07850 ykuS 1490532..1490777 (+) 246 WP_003232382.1 YkuS family protein -
  WHO32_RS07855 mscT 1490814..1491617 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  WHO32_RS07860 ahpA 1491854..1492396 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  WHO32_RS07865 ykuV 1492468..1492914 (+) 447 WP_003245810.1 thiol-disulfide oxidoreductase YkuV -
  WHO32_RS07870 rok 1493380..1493955 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  WHO32_RS07875 cse15 1493996..1494961 (-) 966 WP_003245018.1 spore protein Cse15 -
  WHO32_RS07880 mobA 1495098..1495697 (+) 600 WP_003232376.1 molybdenum cofactor guanylyltransferase -
  WHO32_RS07885 moeB 1495748..1496767 (+) 1020 WP_003232375.1 molybdopterin-synthase adenylyltransferase MoeB -
  WHO32_RS07890 glp 1496785..1498077 (+) 1293 WP_003232372.1 gephyrin-like molybdotransferase Glp -
  WHO32_RS07895 mobB 1498038..1498559 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=950831 WHO32_RS07870 WP_003232378.1 1493380..1493955(+) (rok) [Bacillus subtilis isolate FELIX_MS504]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=950831 WHO32_RS07870 WP_003232378.1 1493380..1493955(+) (rok) [Bacillus subtilis isolate FELIX_MS504]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACGTTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1