Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ACHP5K_RS21055 Genome accession   NZ_CP172173
Coordinates   4272062..4272538 (+) Length   158 a.a.
NCBI ID   WP_001186727.1    Uniprot ID   -
Organism   Escherichia coli strain GF124.3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4267062..4277538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5K_RS21025 (ACHP5K_21025) - 4267727..4268611 (+) 885 WP_023352436.1 GTPase family protein -
  ACHP5K_RS21030 (ACHP5K_21030) - 4268814..4269494 (+) 681 WP_001282912.1 YafY family protein -
  ACHP5K_RS21035 (ACHP5K_21035) - 4269645..4270322 (+) 678 WP_001097567.1 hypothetical protein -
  ACHP5K_RS21040 (ACHP5K_21040) - 4270328..4270561 (+) 234 WP_001278282.1 DUF905 family protein -
  ACHP5K_RS21045 (ACHP5K_21045) - 4270651..4271469 (+) 819 WP_021547707.1 DUF932 domain-containing protein -
  ACHP5K_RS21050 (ACHP5K_21050) - 4271561..4272046 (+) 486 WP_021547706.1 antirestriction protein -
  ACHP5K_RS21055 (ACHP5K_21055) radC 4272062..4272538 (+) 477 WP_001186727.1 RadC family protein Machinery gene
  ACHP5K_RS21060 (ACHP5K_21060) - 4272601..4272822 (+) 222 WP_000692345.1 DUF987 domain-containing protein -
  ACHP5K_RS21065 (ACHP5K_21065) - 4272902..4273270 (+) 369 WP_001389198.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ACHP5K_RS21070 (ACHP5K_21070) - 4273360..4273737 (+) 378 WP_021547705.1 TA system toxin CbtA family protein -
  ACHP5K_RS21075 (ACHP5K_21075) - 4273734..4274222 (+) 489 WP_000761678.1 DUF5983 family protein -
  ACHP5K_RS21080 (ACHP5K_21080) - 4274234..4274431 (+) 198 WP_000839239.1 DUF957 domain-containing protein -
  ACHP5K_RS21085 (ACHP5K_21085) - 4274516..4275382 (+) 867 WP_021547704.1 DUF4942 domain-containing protein -
  ACHP5K_RS21090 (ACHP5K_21090) - 4275454..4275717 (+) 264 WP_001143297.1 type II toxin-antitoxin system ParD family antitoxin -
  ACHP5K_RS21095 (ACHP5K_21095) - 4275714..4276040 (+) 327 WP_000779483.1 type II toxin-antitoxin system RelE/ParE family toxin -
  ACHP5K_RS21100 (ACHP5K_21100) - 4276504..4276663 (+) 160 Protein_4132 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.30 Da        Isoelectric Point: 7.2020

>NTDB_id=950830 ACHP5K_RS21055 WP_001186727.1 4272062..4272538(+) (radC) [Escherichia coli strain GF124.3]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=950830 ACHP5K_RS21055 WP_001186727.1 4272062..4272538(+) (radC) [Escherichia coli strain GF124.3]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399