Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   WHO32_RS05800 Genome accession   NZ_CP148112
Coordinates   1116694..1117272 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111694..1122272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS05780 hemAT 1112205..1113503 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  WHO32_RS05785 yhfW 1113642..1115171 (-) 1530 WP_003245031.1 FAD-dependent oxidoreductase -
  WHO32_RS05790 yhxC 1115283..1116140 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  WHO32_RS05795 yhzC 1116168..1116401 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  WHO32_RS05800 comK 1116694..1117272 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  WHO32_RS05805 yhxD 1117319..1118218 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  WHO32_RS05810 yhjA 1118435..1118704 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  WHO32_RS05815 yhjB 1118747..1120216 (-) 1470 WP_003233134.1 sodium:solute symporter -
  WHO32_RS05820 yhjC 1120213..1120413 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  WHO32_RS05825 - 1120621..1120983 (-) 363 WP_003233132.1 hypothetical protein -
  WHO32_RS05830 yhjE 1121135..1121758 (+) 624 WP_010886465.1 VTT domain-containing protein -
  WHO32_RS05835 lepB 1121760..1122266 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=950818 WHO32_RS05800 WP_003245329.1 1116694..1117272(+) (comK) [Bacillus subtilis isolate FELIX_MS504]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=950818 WHO32_RS05800 WP_003245329.1 1116694..1117272(+) (comK) [Bacillus subtilis isolate FELIX_MS504]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1