Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   WHO32_RS04730 Genome accession   NZ_CP148112
Coordinates   925220..926014 (+) Length   264 a.a.
NCBI ID   WP_003243354.1    Uniprot ID   A0AAE2SGN5
Organism   Bacillus subtilis isolate FELIX_MS504     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 920220..931014
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO32_RS04700 sxzA 921059..922090 (+) 1032 WP_003243057.1 iron ABC transporter permease -
  WHO32_RS04705 yfhB 922205..923086 (+) 882 WP_003242763.1 PhzF family phenazine biosynthesis protein -
  WHO32_RS04710 yfhC 923174..923758 (+) 585 WP_003243940.1 nitroreductase -
  WHO32_RS04715 yfhD 923797..923988 (-) 192 WP_003233561.1 YfhD family protein -
  WHO32_RS04720 yfhE 924055..924165 (-) 111 WP_003223230.1 YfhE family protein -
  WHO32_RS04725 yfhF 924220..925131 (-) 912 WP_003244332.1 TIGR01777 family oxidoreductase -
  WHO32_RS04730 recX 925220..926014 (+) 795 WP_003243354.1 recombination regulator RecX Regulator
  WHO32_RS04735 yfhH 926016..926330 (+) 315 WP_003244592.1 YfhH family protein -
  WHO32_RS04740 yfhI 926473..927666 (+) 1194 WP_003243500.1 MFS transporter -
  WHO32_RS04745 sspK 927699..927851 (-) 153 WP_003223241.1 small, acid-soluble spore protein K -
  WHO32_RS04750 yfhJ 927976..928245 (+) 270 WP_003243789.1 YfhJ family protein -
  WHO32_RS04755 yfhK 928390..928908 (+) 519 WP_003243363.1 SH3 domain-containing protein -
  WHO32_RS04760 spdL 928993..929325 (+) 333 WP_003242803.1 SdpC immunity protein SpdL -
  WHO32_RS04765 ephM 929312..930172 (+) 861 WP_003243419.1 epoxide hydrolase EphM -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 31013.23 Da        Isoelectric Point: 6.6686

>NTDB_id=950813 WHO32_RS04730 WP_003243354.1 925220..926014(+) (recX) [Bacillus subtilis isolate FELIX_MS504]
MPFITKISTQKKNTERFNIFLDDKYAFSVDADVLVKFELKKGKELDDLDIIEIQYGDEVKKGFNRALDFLSYRMRSTKEV
EDHLKKKETSPPVIAEVIHRLNDYKYLNDQEFAAAYVSTHKKTNGKGPDVLFRELRAKGIDDDTIKEALSSFSFEDQTRE
AVKHVEKLLKKDKKLSTKELKQRAQLQLQRKGFSFDVISAAMDQIEYENDEDTEKEALRLHAEKAFRKYRYDGSYESAMK
VKQFLFRKGFSLDLIEQLLQEEEY

Nucleotide


Download         Length: 795 bp        

>NTDB_id=950813 WHO32_RS04730 WP_003243354.1 925220..926014(+) (recX) [Bacillus subtilis isolate FELIX_MS504]
ATGCCGTTTATTACAAAAATATCAACGCAAAAAAAGAATACGGAACGCTTCAATATTTTTCTGGATGATAAATACGCCTT
CAGCGTGGACGCGGATGTGCTCGTGAAATTTGAGCTCAAGAAGGGAAAAGAACTCGATGATCTTGACATCATTGAGATTC
AATACGGCGATGAAGTGAAGAAAGGCTTCAACCGTGCGCTTGACTTTTTATCCTATCGAATGCGGTCGACGAAAGAGGTC
GAGGATCACTTAAAGAAAAAAGAAACCTCGCCCCCCGTCATTGCGGAAGTCATCCATAGGCTTAACGATTACAAGTACTT
AAACGACCAGGAATTTGCCGCAGCCTATGTCAGCACTCACAAAAAAACAAACGGAAAAGGCCCTGATGTTTTGTTCAGAG
AGCTAAGAGCGAAGGGAATTGATGACGATACAATTAAGGAGGCGCTAAGTTCCTTTTCCTTTGAAGATCAGACAAGAGAA
GCGGTCAAGCATGTTGAAAAGCTTCTCAAAAAAGATAAAAAGCTTTCGACGAAAGAACTCAAACAGCGCGCCCAGCTGCA
GCTTCAGCGCAAGGGCTTCTCATTTGATGTTATCAGCGCGGCGATGGATCAGATTGAATATGAAAATGATGAAGACACAG
AGAAAGAAGCGCTGCGCCTTCACGCGGAAAAAGCGTTTAGAAAATACCGCTATGACGGCTCATATGAAAGCGCCATGAAG
GTCAAACAATTTTTATTCCGCAAAGGATTCTCACTCGATTTAATCGAGCAATTACTGCAGGAAGAGGAGTACTGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

100

100

1