Detailed information NTG0950788

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: ACHP5K_RS04895
• Genome accession: NZ_CP172173
• Coordinates: 1002699..1003691 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain GF124.3
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 997699..1008691

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACHP5K_RS04865 (ACHP5K_04865)	ispD	997760..998470 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
ACHP5K_RS04870 (ACHP5K_04870)	ispF	998470..998949 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
ACHP5K_RS04875 (ACHP5K_04875)	truD	998946..999995 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
ACHP5K_RS04880 (ACHP5K_04880)	surE	999976..1000737 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
ACHP5K_RS04885 (ACHP5K_04885)	pcm	1000731..1001357 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
ACHP5K_RS04890 (ACHP5K_04890)	nlpD	1001542..1002636 (+)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
ACHP5K_RS04895 (ACHP5K_04895)	rpoS	1002699..1003691 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
ACHP5K_RS04900 (ACHP5K_04900)	ygbN	1003785..1005149 (-)	1365	WP_049254918.1	GntP family transporter	-
ACHP5K_RS04905 (ACHP5K_04905)	ygbM	1005238..1006014 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
ACHP5K_RS04910 (ACHP5K_04910)	ygbL	1006019..1006657 (-)	639	WP_001278994.1	aldolase	-
ACHP5K_RS04915 (ACHP5K_04915)	otnK	1006654..1007916 (-)	1263	WP_000590405.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=950788 ACHP5K_RS04895 WP_000081550.1 1002699..1003691(+) (rpoS) [Escherichia coli strain GF124.3]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=950788 ACHP5K_RS04895 WP_000081550.1 1002699..1003691(+) (rpoS) [Escherichia coli strain GF124.3]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715