Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   WHO49_RS13350 Genome accession   NZ_CP148110
Coordinates   2551882..2552217 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis isolate FELIX_MS499     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2546882..2557217
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO49_RS13330 gcvT 2547474..2548562 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  WHO49_RS13335 yqhH 2549004..2550677 (+) 1674 WP_004398544.1 SNF2-related protein -
  WHO49_RS13340 yqhG 2550698..2551492 (+) 795 WP_003230200.1 YqhG family protein -
  WHO49_RS13345 sinI 2551675..2551848 (+) 174 WP_003230187.1 anti-repressor SinI family protein Regulator
  WHO49_RS13350 sinR 2551882..2552217 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  WHO49_RS13355 tasA 2552310..2553095 (-) 786 WP_004398632.1 biofilm matrix protein TasA -
  WHO49_RS13360 sipW 2553159..2553731 (-) 573 WP_003246088.1 signal peptidase I -
  WHO49_RS13365 tapA 2553715..2554476 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  WHO49_RS13370 yqzG 2554748..2555074 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  WHO49_RS13375 spoIIT 2555116..2555295 (-) 180 WP_003230176.1 YqzE family protein -
  WHO49_RS13380 comGG 2555366..2555740 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  WHO49_RS13385 comGF 2555741..2556124 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  WHO49_RS13390 comGE 2556150..2556497 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  WHO49_RS13395 comGD 2556481..2556912 (-) 432 WP_004398628.1 comG operon protein ComGD Machinery gene
  WHO49_RS13400 comGC 2556902..2557198 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=950755 WHO49_RS13350 WP_003226345.1 2551882..2552217(+) (sinR) [Bacillus subtilis isolate FELIX_MS499]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=950755 WHO49_RS13350 WP_003226345.1 2551882..2552217(+) (sinR) [Bacillus subtilis isolate FELIX_MS499]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1