Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   WHO49_RS12170 Genome accession   NZ_CP148110
Coordinates   2340402..2341022 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis isolate FELIX_MS499     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335402..2346022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO49_RS12130 ypqE 2336533..2337039 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  WHO49_RS12135 ypqA 2337177..2337596 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  WHO49_RS12140 yppG 2337617..2337994 (-) 378 WP_004398696.1 YppG family protein -
  WHO49_RS12145 yppF 2338182..2338370 (+) 189 WP_003230690.1 YppF family protein -
  WHO49_RS12150 yppE 2338409..2338780 (-) 372 WP_003246080.1 YppE family protein -
  WHO49_RS12155 yppD 2338826..2339071 (-) 246 WP_004398488.1 YppD family protein -
  WHO49_RS12160 sspM 2339270..2339374 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  WHO49_RS12165 yppC 2339399..2340361 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  WHO49_RS12170 recU 2340402..2341022 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  WHO49_RS12175 ponA 2341044..2343788 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  WHO49_RS12180 ypoC 2343864..2344358 (-) 495 WP_009967579.1 YpoC family protein -
  WHO49_RS12185 nth 2344355..2345014 (-) 660 WP_009967580.1 endonuclease III -
  WHO49_RS12190 dnaD 2345033..2345731 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=950751 WHO49_RS12170 WP_004399067.1 2340402..2341022(+) (recU) [Bacillus subtilis isolate FELIX_MS499]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=950751 WHO49_RS12170 WP_004399067.1 2340402..2341022(+) (recU) [Bacillus subtilis isolate FELIX_MS499]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1