Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AABA08_RS00195 Genome accession   NZ_AP028602
Coordinates   36128..36898 (+) Length   256 a.a.
NCBI ID   WP_000616162.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PF2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 31128..41898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AABA08_RS00175 (TKY092604_00280) - 33138..33575 (+) 438 WP_000076507.1 CoA-binding protein -
  AABA08_RS00180 - 33616..33774 (+) 159 WP_001842139.1 hypothetical protein -
  AABA08_RS00185 (TKY092604_00290) - 33803..34813 (-) 1011 WP_000009179.1 YeiH family protein -
  AABA08_RS00190 (TKY092604_00300) - 34962..36131 (+) 1170 WP_000366379.1 pyridoxal phosphate-dependent aminotransferase -
  AABA08_RS00195 (TKY092604_00310) recO 36128..36898 (+) 771 WP_000616162.1 DNA repair protein RecO Machinery gene
  AABA08_RS00200 (TKY092604_00320) plsX 36895..37887 (+) 993 WP_000717460.1 phosphate acyltransferase PlsX -
  AABA08_RS00205 (TKY092604_00330) - 37893..38126 (+) 234 WP_000136447.1 acyl carrier protein -
  AABA08_RS00210 (TKY092604_00340) - 38163..38462 (+) 300 Protein_34 transposase family protein -
  AABA08_RS00215 (TKY092604_00350) blpU 38665..38895 (+) 231 WP_001093068.1 bacteriocin-like peptide BlpU -
  AABA08_RS00220 - 38898..39023 (+) 126 WP_000346297.1 PncF family bacteriocin immunity protein -
  AABA08_RS00225 (TKY092604_00360) comA 39610..41763 (+) 2154 WP_000668287.1 peptide cleavage/export ABC transporter ComA Regulator

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29788.29 Da        Isoelectric Point: 5.3615

>NTDB_id=95075 AABA08_RS00195 WP_000616162.1 36128..36898(+) (recO) [Streptococcus pneumoniae strain PF2]
MIQSITSQGLVLYNRNFREDDKLVKIFTEQVGKRMFFVKHAGQSKLAPVIQPLVLARFLLRINDDGLSYIEDYHEVMTFP
KINSDLFVMAYATYVAALADASLQDNQQDAPLFAFLQKTLELMEAGLDYQVLTNIFEIQILTRFGISLNFNECVFCHRVG
QAFDFSFKYGACLCPEHYHEDERRCHLNPNIPYLLNQFQAIDFETLETISLKPGIKQELRQFMDQLYEEYVGIHLKSKKF
IDSLADWGQLLKEEKK

Nucleotide


Download         Length: 771 bp        

>NTDB_id=95075 AABA08_RS00195 WP_000616162.1 36128..36898(+) (recO) [Streptococcus pneumoniae strain PF2]
ATGATTCAGTCTATCACGAGTCAAGGCTTGGTGCTTTACAATCGCAATTTTCGTGAGGATGACAAGCTCGTCAAAATTTT
TACAGAGCAGGTTGGCAAACGCATGTTTTTTGTCAAACACGCTGGTCAGTCTAAGCTGGCGCCTGTTATTCAGCCCTTGG
TGTTGGCACGATTTCTCTTGCGAATCAATGATGACGGACTCAGTTACATCGAAGACTATCATGAGGTCATGACTTTTCCC
AAGATTAATAGTGACCTCTTTGTCATGGCCTATGCGACCTATGTGGCAGCTCTTGCAGATGCTAGTTTGCAGGACAATCA
GCAGGATGCTCCCTTGTTTGCTTTTTTGCAAAAGACTTTGGAGTTGATGGAAGCAGGCTTGGATTATCAGGTTTTGACCA
ATATTTTTGAAATTCAAATTTTGACTCGATTTGGAATCAGCCTCAATTTTAATGAGTGTGTCTTCTGCCATCGGGTTGGT
CAGGCTTTTGACTTTTCTTTCAAATATGGAGCCTGCCTCTGTCCAGAGCATTATCATGAGGATGAGAGACGTTGTCATCT
CAATCCCAATATCCCCTATCTGCTCAATCAATTTCAAGCTATTGATTTTGAGACTTTGGAGACCATTTCGCTCAAGCCTG
GAATCAAGCAAGAGCTACGCCAATTTATGGATCAATTATATGAAGAGTACGTTGGGATTCACCTAAAATCAAAGAAATTT
ATTGATTCCCTAGCAGACTGGGGACAATTACTAAAAGAGGAAAAGAAATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(4-72)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

99.609

100

0.996

Multiple sequence alignment