Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   WHO69_RS12145 Genome accession   NZ_CP148108
Coordinates   2667775..2668293 (-) Length   172 a.a.
NCBI ID   WP_014232962.1    Uniprot ID   A0AAN0Y3W6
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2662775..2673293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS12120 rimM 2662857..2663405 (-) 549 WP_014232958.1 ribosome maturation factor RimM -
  WHO69_RS12125 rpsP 2663436..2663684 (-) 249 WP_005379962.1 30S ribosomal protein S16 -
  WHO69_RS12130 ffh 2663893..2665275 (-) 1383 WP_014232959.1 signal recognition particle protein -
  WHO69_RS12135 - 2665500..2666294 (+) 795 WP_014232960.1 inner membrane protein YpjD -
  WHO69_RS12140 - 2666413..2667690 (+) 1278 WP_014232961.1 CNNM domain-containing protein -
  WHO69_RS12145 luxS 2667775..2668293 (-) 519 WP_014232962.1 S-ribosylhomocysteine lyase Regulator
  WHO69_RS12150 - 2668363..2668968 (-) 606 WP_014232963.1 hypothetical protein -
  WHO69_RS12155 gshA 2668993..2670561 (-) 1569 WP_020333954.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19050.76 Da        Isoelectric Point: 4.7221

>NTDB_id=950688 WHO69_RS12145 WP_014232962.1 2667775..2668293(-) (luxS) [Vibrio natriegens isolate FELIX_MS472]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRSHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIASMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILDAGVSVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=950688 WHO69_RS12145 WP_014232962.1 2667775..2668293(-) (luxS) [Vibrio natriegens isolate FELIX_MS472]
ATGCCTTTACTCGATAGTTTTACTGTGGATCACACTCGTATGAATGCACCTGCTGTGCGAGTCGCGAAAACCATGCAAAC
CCCAAAAGGGGACACCATTACTGTCTTCGATTTACGCTTTACTGCACCAAACAAAGATATCCTTTCAGAGAAAGGCATCC
ATACACTAGAGCACCTTTACGCTGGCTTTATGCGTAGCCATCTAAACGGTGACAGCGTTGAGATCATTGATATTTCACCA
ATGGGATGTCGTACTGGATTCTACATGAGCCTGATCGGTACGCCTTCAGAGCAACAAGTCGCGGATGCTTGGATTGCATC
AATGGAAGATGTACTGAAAGTAGAAAGTCAGAACAAAATCCCTGAGCTAAATGAATACCAATGTGGCACTGCGGCAATGC
ACTCACTGGATGAAGCAAAGCAAATTGCGAAAAACATTCTGGACGCGGGTGTGTCAGTGAATAAAAATGATGAGCTAGCT
CTGCCTGAGTCGATGTTAAAAGAACTGCGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

86.55

99.419

0.86