Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   WHO69_RS10105 Genome accession   NZ_CP148108
Coordinates   2210833..2212194 (-) Length   453 a.a.
NCBI ID   WP_049794667.1    Uniprot ID   -
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2205833..2217194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS10070 moaE 2206391..2206846 (-) 456 WP_020335667.1 molybdopterin synthase catalytic subunit MoaE -
  WHO69_RS10075 moaD 2206848..2207105 (-) 258 WP_020335669.1 molybdopterin synthase sulfur carrier subunit -
  WHO69_RS10080 moaC 2207102..2207581 (-) 480 WP_014232530.1 cyclic pyranopterin monophosphate synthase MoaC -
  WHO69_RS10085 moaB 2207609..2208121 (-) 513 WP_014232531.1 molybdenum cofactor biosynthesis protein B -
  WHO69_RS10090 moaA 2208222..2209211 (-) 990 WP_014232532.1 GTP 3',8-cyclase MoaA -
  WHO69_RS10095 - 2209518..2210414 (+) 897 WP_020335670.1 YvcK family protein -
  WHO69_RS10100 luxU 2210492..2210836 (-) 345 WP_020335671.1 quorum-sensing phosphorelay protein LuxU -
  WHO69_RS10105 luxO 2210833..2212194 (-) 1362 WP_049794667.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  WHO69_RS10110 uvrB 2212525..2214555 (-) 2031 WP_014232536.1 excinuclease ABC subunit UvrB -
  WHO69_RS10120 rsxA 2215541..2216119 (+) 579 WP_014232537.1 electron transport complex subunit RsxA -
  WHO69_RS10125 rsxB 2216123..2216719 (+) 597 WP_014232538.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50378.40 Da        Isoelectric Point: 6.0277

>NTDB_id=950681 WHO69_RS10105 WP_049794667.1 2210833..2212194(-) (luxO) [Vibrio natriegens isolate FELIX_MS472]
MVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLKHRIPDLILLDLRLPDMTGMDVLHAVKQSHPDVPIIFMTAHGSI
DTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRTIDSAASSKASIFIT
GESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADGGTLFLDELCEMDLD
LQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGEDVVEIAYSLLG
YMSHEEGKGFVRFSQEVIDRFNNYEWPGNVRQLQNVLRNIVVLNHGKEITLDMLPPPLNQPLERKTSSATVESQVMTASD
IVPLWITEKTAIERAIEACDGNIPRAAGYLDVSPSTIYRKLQAWNSKDERQKV

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=950681 WHO69_RS10105 WP_049794667.1 2210833..2212194(-) (luxO) [Vibrio natriegens isolate FELIX_MS472]
ATGGTCGAGGATACTGCGTCGGTTGCGGCGTTGTATCGCTCTTACCTGACGCCACTAGGTATTGACATCAATATTGTCGG
TACCGGGCGTGATGCGATCGAAAGTCTGAAACATCGTATTCCCGACCTTATTCTGCTTGATCTTCGTCTGCCTGACATGA
CGGGTATGGACGTTCTGCATGCAGTGAAACAAAGTCATCCAGACGTTCCTATCATCTTTATGACTGCACACGGCTCTATC
GACACTGCGGTAGAAGCAATGCGTCATGGCTCTCAAGACTTTTTGATTAAACCGTGTGAAGCCGACCGCTTGCGTGTCAC
GGTGAACAACGCGATACGTAAAGCGACCAAGTTAAAAAACGAAGCGGATAATCCCGGTAACCAGAATTATCAGGGTTTCA
TCGGTAGTAGCCAAACCATGCAACAGGTTTACCGCACCATTGACTCAGCAGCGAGCAGTAAGGCGAGTATTTTCATTACT
GGTGAAAGTGGCACGGGTAAAGAGGTGTGTGCCGAAGCTATCCATGCCGCAAGTAAACGAGGTGATAAACCATTTATTGC
GATTAACTGTGCAGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTTGGTCACGTAAAAGGCGCGTTTACTGGTGCGG
CGAATGATCGTCAAGGTGCGGCAGAACTAGCGGATGGCGGTACGCTTTTCCTCGATGAATTGTGTGAAATGGACTTGGAC
TTACAGACCAAGTTGTTGCGATTTATCCAGACTGGTACCTTCCAGAAAGTCGGCTCCTCAAAAATGAAAAGCGTGGATGT
GCGCTTTGTGTGCGCCACCAACCGTGACCCTTGGAAAGAGGTTCAGGAAGGGCGCTTTCGTGAAGACCTATATTACCGCT
TATACGTAATACCATTGCATCTTCCACCTTTGCGTGAGCGTGGCGAAGACGTTGTCGAAATTGCTTATTCTTTATTGGGT
TATATGTCTCATGAAGAGGGGAAAGGCTTTGTACGCTTTTCGCAAGAAGTGATAGATCGATTTAATAACTATGAATGGCC
CGGTAACGTACGTCAGTTACAAAACGTGCTTCGCAATATCGTGGTGTTAAATCACGGTAAAGAAATTACTTTGGATATGC
TTCCGCCTCCATTGAATCAACCTTTGGAGCGTAAGACATCAAGCGCCACAGTTGAGTCTCAAGTGATGACAGCCTCGGAC
ATTGTGCCACTGTGGATTACGGAAAAAACGGCGATTGAACGCGCAATTGAAGCGTGCGACGGTAATATTCCTCGAGCGGC
AGGGTATCTAGATGTCAGCCCATCGACGATTTACCGTAAGCTACAAGCATGGAACAGCAAGGATGAGCGGCAAAAGGTAT
GA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)

Sigma-54 interaction domain (Sigma54_activat)

(134-299)

Response regulator receiver domain (Response_reg)

(2-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

98.896

0.859