Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACHP5M_RS22335 Genome accession   NZ_CP172163
Coordinates   4611006..4611998 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain GF50     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4606006..4616998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACHP5M_RS22310 (ACHP5M_22310) rbsD 4606130..4606549 (+) 420 WP_032218741.1 D-ribose pyranase -
  ACHP5M_RS22315 (ACHP5M_22315) rbsA 4606557..4608062 (+) 1506 WP_032218419.1 ribose ABC transporter ATP-binding protein RbsA -
  ACHP5M_RS22320 (ACHP5M_22320) rbsC 4608067..4609032 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  ACHP5M_RS22325 (ACHP5M_22325) rbsB 4609057..4609947 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  ACHP5M_RS22330 (ACHP5M_22330) rbsK 4610073..4611002 (+) 930 WP_001300603.1 ribokinase -
  ACHP5M_RS22335 (ACHP5M_22335) cytR 4611006..4611998 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  ACHP5M_RS22340 (ACHP5M_22340) mdtD 4611964..4613391 (-) 1428 WP_032218416.1 multidrug transporter subunit MdtD -
  ACHP5M_RS22345 (ACHP5M_22345) yieP 4613414..4614106 (-) 693 WP_001131169.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=950681 ACHP5M_RS22335 WP_000224470.1 4611006..4611998(+) (cytR) [Escherichia coli strain GF50]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=950681 ACHP5M_RS22335 WP_000224470.1 4611006..4611998(+) (cytR) [Escherichia coli strain GF50]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCCCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364