Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   WHO69_RS01305 Genome accession   NZ_CP148108
Coordinates   283786..284793 (-) Length   335 a.a.
NCBI ID   WP_014230660.1    Uniprot ID   -
Organism   Vibrio natriegens isolate FELIX_MS472     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 278786..289793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHO69_RS01275 zapB 278910..279152 (+) 243 WP_014230654.1 cell division protein ZapB -
  WHO69_RS01280 rraA 279226..279768 (-) 543 WP_014230655.1 ribonuclease E activity regulator RraA -
  WHO69_RS01285 - 279845..280762 (-) 918 WP_020335798.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  WHO69_RS01290 hslU 281018..282349 (-) 1332 WP_014230657.1 HslU--HslV peptidase ATPase subunit -
  WHO69_RS01295 hslV 282373..282924 (-) 552 WP_020335799.1 ATP-dependent protease subunit HslV -
  WHO69_RS01300 - 283079..283624 (-) 546 WP_014230659.1 SPOR domain-containing protein -
  WHO69_RS01305 cytR 283786..284793 (-) 1008 WP_014230660.1 DNA-binding transcriptional regulator CytR Regulator
  WHO69_RS01310 priA 285129..287333 (-) 2205 WP_020335801.1 primosomal protein N' -
  WHO69_RS01315 rpmE 287631..287852 (+) 222 WP_014230662.1 50S ribosomal protein L31 -
  WHO69_RS01320 rpsJ 288311..288622 (+) 312 WP_004410492.1 30S ribosomal protein S10 -
  WHO69_RS01325 rplC 288637..289266 (+) 630 WP_014230663.1 50S ribosomal protein L3 -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 36842.30 Da        Isoelectric Point: 6.2447

>NTDB_id=950667 WHO69_RS01305 WP_014230660.1 283786..284793(-) (cytR) [Vibrio natriegens isolate FELIX_MS472]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGINKDPQYSIVTEFSFDGGAKAVRKLLELAEPPTA
IFCHCDTMAIGAIQEAKKLGFRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TNLIVRGSAAPPQRA

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=950667 WHO69_RS01305 WP_014230660.1 283786..284793(-) (cytR) [Vibrio natriegens isolate FELIX_MS472]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTATCTACCGCGACGGTATCTCGAGCATTAATGAATCCGGAGAA
AGTCTCCTCTTCAACCAGAAAAAGAGTTGAAGACGCGGTACTCGAAGCAGGTTACTCACCAAATTCATTAGCGCGTAATT
TACGACGAAACGAATCGAAAACCATTGTTACGATCGTTCCTGACATCTGCGACCCTTACTTTTCCGAAATCATCCGTGGT
ATCGAAGATGCGGCCATGGAGCACGGCTACCTGGTTTTGCTGGGAGACAGTGGCCAGCAGAAGAAACGCGAAAGCTCATT
CGTAAACCTGGTATTTACAAAGCAAGCAGACGGGATGCTGCTACTTGGTACTGACTTACCGTTTGATGTTAGTAAGCCAG
AGCAGAAAAACCTGCCACCAATGGTCATGGCGTGTGAATTTGCGCCTGAGCTCGAACTGCCAACCGTTCATATCGATAAC
CTGACTTCTGCCTTTGAAGCGGTCAATTATCTGACTCAGCTTGGCCACAAACGTATTGCGCAAATTTCAGGTCCTGATAC
CGCGGTATTGTGCCAATTCCGTCAACAAGGTTACCAGCAAGCACTGCGTCGTGCAGGGATCAATAAAGACCCGCAATACA
GTATTGTCACCGAGTTCTCTTTTGACGGCGGAGCAAAAGCAGTGCGTAAGCTGCTGGAACTAGCGGAACCACCAACCGCG
ATTTTCTGCCACTGTGACACGATGGCAATCGGCGCCATTCAAGAAGCGAAAAAACTCGGCTTCCGTGTACCACAAGATCT
ATCGGTTGTAGGTTTTGATGACATCAATTTCGCGCAGTACTGTGATCCACCGTTAACGACGATCTCTCAGCCTCGTTACG
AGATTGGCCGACAAGCGATGCTAATGATGTTAGAGCTTTTAAAAGGCCACGATGTGCATTCTGGATCTCGTCTTCTGGAG
ACTAACCTGATTGTGCGCGGAAGTGCTGCGCCTCCTCAACGAGCGTAA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

97.612

100

0.976
  cytR Vibrio cholerae C6706

89.222

99.701

0.89