Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   WHL98_RS19155 Genome accession   NZ_CP148104
Coordinates   3641977..3642699 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis subsp. subtilis isolate FELIX_MS438     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636977..3647699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WHL98_RS19120 fliW 3637116..3637547 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  WHL98_RS19125 yviE 3637568..3638143 (-) 576 WP_003243053.1 DUF6470 family protein -
  WHL98_RS19130 flgL 3638190..3639086 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  WHL98_RS19135 flgK 3639097..3640620 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  WHL98_RS19140 flgN 3640639..3641121 (-) 483 WP_003227999.1 flagellar protein FlgN -
  WHL98_RS19145 flgM 3641137..3641403 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  WHL98_RS19150 yvyF 3641484..3641903 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  WHL98_RS19155 comFC 3641977..3642699 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  WHL98_RS19160 comFB 3642663..3642959 (-) 297 WP_003227989.1 late competence protein ComFB -
  WHL98_RS19165 comFA 3643019..3644410 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  WHL98_RS19170 fakBA 3644516..3645361 (-) 846 WP_003244125.1 DegV family protein -
  WHL98_RS19175 degU 3645459..3646148 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  WHL98_RS19180 degS 3646231..3647388 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=950630 WHL98_RS19155 WP_003227991.1 3641977..3642699(-) (comFC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=950630 WHL98_RS19155 WP_003227991.1 3641977..3642699(-) (comFC) [Bacillus subtilis subsp. subtilis isolate FELIX_MS438]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1